{"title":"使用两步比浊生长测量法确定极嗜酸性古菌 Ferroplasma acidiphilum DSM 12658 的生长参数特征","authors":"","doi":"10.1016/j.mex.2024.102953","DOIUrl":null,"url":null,"abstract":"<div><p>The acidophilic archaeon <em>Ferroplasma acidiphilum</em> exhibits remarkable adaptations to life in highly acidic environments. Nevertheless, the investigation of its molecular biology is challenging because of the slow growth of the organism, low biomass yield, and limitations of standard growth measurement techniques caused by iron oxidation.</p><ul><li><span>•</span><span><p>A novel two-step turbidimetric growth measurement (2TGM) method was developed to address the shortcomings associated with iron precipitation in culture media. The method comprises two distinct preparation steps.</p></span></li><li><span>•</span><span><p>The initial 2TGM step involves centrifuging culture samples at high speed to remove <em>F. acidiphilum</em> cells and iron precipitates, thus preparing a blank.</p></span></li><li><span>•</span><span><p>The second 2TGM step involves centrifuging the culture at a lower speed with the objective of selectively removing iron precipitates, thus allowing <em>F. acidiphilum</em> cells to remain suspended in the supernatant. This preparation enables subsequent measurement of cell density.</p></span></li></ul>A study on the growth of <em>F. acidiphilum</em> showed a standard logistic pattern with a 35-h lag phase, approximately 9-h doubling time, and 0.042 OD carrying capacity. A new two-step turbidimetric growth measurement (2TGM) method overcomes limitations of existing approaches, enabling further investigation of <em>F. acidiphilum</em>.</div>","PeriodicalId":18446,"journal":{"name":"MethodsX","volume":null,"pages":null},"PeriodicalIF":1.6000,"publicationDate":"2024-09-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2215016124004047/pdfft?md5=894524ae4f3e1a65aab174361c237f7c&pid=1-s2.0-S2215016124004047-main.pdf","citationCount":"0","resultStr":"{\"title\":\"Characterisation of growth parameters for the extremely acidophilic archaeon Ferroplasma acidiphilum DSM 12658 using a two-step turbidimetric growth measurement method\",\"authors\":\"\",\"doi\":\"10.1016/j.mex.2024.102953\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><p>The acidophilic archaeon <em>Ferroplasma acidiphilum</em> exhibits remarkable adaptations to life in highly acidic environments. Nevertheless, the investigation of its molecular biology is challenging because of the slow growth of the organism, low biomass yield, and limitations of standard growth measurement techniques caused by iron oxidation.</p><ul><li><span>•</span><span><p>A novel two-step turbidimetric growth measurement (2TGM) method was developed to address the shortcomings associated with iron precipitation in culture media. The method comprises two distinct preparation steps.</p></span></li><li><span>•</span><span><p>The initial 2TGM step involves centrifuging culture samples at high speed to remove <em>F. acidiphilum</em> cells and iron precipitates, thus preparing a blank.</p></span></li><li><span>•</span><span><p>The second 2TGM step involves centrifuging the culture at a lower speed with the objective of selectively removing iron precipitates, thus allowing <em>F. acidiphilum</em> cells to remain suspended in the supernatant. This preparation enables subsequent measurement of cell density.</p></span></li></ul>A study on the growth of <em>F. acidiphilum</em> showed a standard logistic pattern with a 35-h lag phase, approximately 9-h doubling time, and 0.042 OD carrying capacity. A new two-step turbidimetric growth measurement (2TGM) method overcomes limitations of existing approaches, enabling further investigation of <em>F. acidiphilum</em>.</div>\",\"PeriodicalId\":18446,\"journal\":{\"name\":\"MethodsX\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":1.6000,\"publicationDate\":\"2024-09-10\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.sciencedirect.com/science/article/pii/S2215016124004047/pdfft?md5=894524ae4f3e1a65aab174361c237f7c&pid=1-s2.0-S2215016124004047-main.pdf\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"MethodsX\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S2215016124004047\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"MULTIDISCIPLINARY SCIENCES\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"MethodsX","FirstCategoryId":"1085","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S2215016124004047","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"MULTIDISCIPLINARY SCIENCES","Score":null,"Total":0}
引用次数: 0
摘要
嗜酸古生菌 Ferroplasma acidiphilum 具有适应高酸性环境的卓越能力。然而,由于该生物生长缓慢、生物量产量低以及铁氧化造成的标准生长测量技术的局限性,对其分子生物学的研究具有挑战性。该方法包括两个不同的制备步骤。-最初的 2TGM 步骤包括高速离心培养样本,以除去 F. acidiphilum 细胞和铁沉淀物,从而制备空白样;-第二个 2TGM 步骤包括低速离心培养样本,目的是选择性地除去铁沉淀物,从而使 F. acidiphilum 细胞悬浮在上清液中。对 F. acidiphilum 生长的研究表明,它的生长具有标准的逻辑模式,滞后期为 35 小时,倍增时间约为 9 小时,承载能力为 0.042 OD。一种新的两步比浊生长测量(2TGM)方法克服了现有方法的局限性,有助于进一步研究蚜蝇。
Characterisation of growth parameters for the extremely acidophilic archaeon Ferroplasma acidiphilum DSM 12658 using a two-step turbidimetric growth measurement method
The acidophilic archaeon Ferroplasma acidiphilum exhibits remarkable adaptations to life in highly acidic environments. Nevertheless, the investigation of its molecular biology is challenging because of the slow growth of the organism, low biomass yield, and limitations of standard growth measurement techniques caused by iron oxidation.
•
A novel two-step turbidimetric growth measurement (2TGM) method was developed to address the shortcomings associated with iron precipitation in culture media. The method comprises two distinct preparation steps.
•
The initial 2TGM step involves centrifuging culture samples at high speed to remove F. acidiphilum cells and iron precipitates, thus preparing a blank.
•
The second 2TGM step involves centrifuging the culture at a lower speed with the objective of selectively removing iron precipitates, thus allowing F. acidiphilum cells to remain suspended in the supernatant. This preparation enables subsequent measurement of cell density.
A study on the growth of F. acidiphilum showed a standard logistic pattern with a 35-h lag phase, approximately 9-h doubling time, and 0.042 OD carrying capacity. A new two-step turbidimetric growth measurement (2TGM) method overcomes limitations of existing approaches, enabling further investigation of F. acidiphilum.