SpeechBrain-MOABB:用于对应用于脑电图信号的深度神经网络进行基准测试的开源 Python 库

IF 7 2区 医学 Q1 BIOLOGY
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引用次数: 0

摘要

深度学习为脑电图解码带来了革命性的变化,展示了其超越传统机器学习模型的能力。然而,与其他领域不同的是,脑电图解码缺乏专用于神经网络的全面开源库。现有的工具(MOABB 和 braindecode)无法创建强大而完整的解码管道,因为它们不支持在整个管道中进行超参数搜索,而且对网络随机初始化导致的结果波动很敏感。此外,标准化实验协议的缺失也加剧了该领域的可重复性危机。为了解决这些局限性,我们推出了 SpeechBrain-MOABB,这是一个新颖的开源工具包,旨在促进基于深度学习的全面脑电图解码管道的开发。SpeechBrain-MOABB 融合了完整的实验协议,对超参数搜索和模型评估等关键阶段进行了标准化。它本机支持多步超参数搜索,以便在整个管道定义的高维空间中找到最佳超参数,还支持多种子训练和评估,以便获得不受随机初始化引起的变异影响的性能估计。SpeechBrain-MOABB 的表现优于其他库,包括 MOABB 和 braindecode,准确率分别提高了 14.9% 和 25.2%(平均值)。通过实现易于使用和易于共享的解码管道,神经科学家可以利用我们的工具包,以可复制和可信的方式利用神经网络对脑电图进行解码。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
SpeechBrain-MOABB: An open-source Python library for benchmarking deep neural networks applied to EEG signals

Deep learning has revolutionized EEG decoding, showcasing its ability to outperform traditional machine learning models. However, unlike other fields, EEG decoding lacks comprehensive open-source libraries dedicated to neural networks. Existing tools (MOABB and braindecode) prevent the creation of robust and complete decoding pipelines, as they lack support for hyperparameter search across the entire pipeline, and are sensitive to fluctuations in results due to network random initialization. Furthermore, the absence of a standardized experimental protocol exacerbates the reproducibility crisis in the field. To address these limitations, we introduce SpeechBrain-MOABB, a novel open-source toolkit carefully designed to facilitate the development of a comprehensive EEG decoding pipeline based on deep learning. SpeechBrain-MOABB incorporates a complete experimental protocol that standardizes critical phases, such as hyperparameter search and model evaluation. It natively supports multi-step hyperparameter search for finding the optimal hyperparameters in a high-dimensional space defined by the entire pipeline, and multi-seed training and evaluation for obtaining performance estimates robust to the variability caused by random initialization. SpeechBrain-MOABB outperforms other libraries, including MOABB and braindecode, with accuracy improvements of 14.9% and 25.2% (on average), respectively. By enabling easy-to-use and easy-to-share decoding pipelines, our toolkit can be exploited by neuroscientists for decoding EEG with neural networks in a replicable and trustworthy way.

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来源期刊
Computers in biology and medicine
Computers in biology and medicine 工程技术-工程:生物医学
CiteScore
11.70
自引率
10.40%
发文量
1086
审稿时长
74 days
期刊介绍: Computers in Biology and Medicine is an international forum for sharing groundbreaking advancements in the use of computers in bioscience and medicine. This journal serves as a medium for communicating essential research, instruction, ideas, and information regarding the rapidly evolving field of computer applications in these domains. By encouraging the exchange of knowledge, we aim to facilitate progress and innovation in the utilization of computers in biology and medicine.
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