Mohamed Shaker S. Adam , Zahraa H.A. Al-Ateya , Mohamed M. Makhlouf , Obadah S. Abdel-Rahman , Amneh Shtaiwi , Ahmed Khalil
{"title":"取代基对二靛红二腙席夫碱化学和生物特性的影响:DFT 和对接研究","authors":"Mohamed Shaker S. Adam , Zahraa H.A. Al-Ateya , Mohamed M. Makhlouf , Obadah S. Abdel-Rahman , Amneh Shtaiwi , Ahmed Khalil","doi":"10.1016/j.compbiolchem.2024.108190","DOIUrl":null,"url":null,"abstract":"<div><p>According to the considered role of lipophilicity-hydrophobicity on organic Schiff base hydrazones, different substituents of phenyl, ethyl, and methyl groups were inserted in the synthetic strategy of diisatin dihydrazones (L1–4). The biochemical enhancement was evaluated depending on their inhibitive potential of the growth power of three human tumor cells, fungi, and bacteria. The biochemical assays assigned the effected role of different substituents of phenyl, ethyl, and methyl groups on the effectiveness of their diisatin dihydrazone reagents. The interacting modes with calf thymus DNA (<em>i.e.</em> Ct-DNA) were studied <em>via</em> viscometric and spectrophotometric titration.</p><p>The organo-reagent L1 with the oxalic derivative assigned a performed inhibitive action for the examined microbes and the human tumor cell lines growing up over the terephthalic (L4) > malonic (L2) > succinic (L3) ones. From <em>K</em><sub>b</sub> = binding constant, and <span><math><mrow><mo>∆</mo><msubsup><mrow><mi>G</mi></mrow><mrow><mi>b</mi></mrow><mrow><mo>≠</mo></mrow></msubsup></mrow></math></span> = Gibb’s free energy values, the binding of interaction within Ct-DNA was evaluated for all compounds (L1–4), in which L1, L3, and L4 assigned the highest reactivity referring to the covalent/non-covalent modes of interaction, as given for (L1–4), 14.32, 13.28, 10.87, and 12.41 × 10<sup>7</sup> mol<sup>−1</sup> dm<sup>3</sup>, and −45<sup>.1</sup>7, −43.24, −43.75, and −44.05 kJ mol<sup>−1</sup>, respectively. DFT and docking studies were achieved to support the current work.</p></div>","PeriodicalId":10616,"journal":{"name":"Computational Biology and Chemistry","volume":"113 ","pages":"Article 108190"},"PeriodicalIF":2.6000,"publicationDate":"2024-08-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Substituent effect on the chemical and biological properties of diisatin dihydrazone Schiff bases: DFT and docking studies\",\"authors\":\"Mohamed Shaker S. Adam , Zahraa H.A. Al-Ateya , Mohamed M. Makhlouf , Obadah S. Abdel-Rahman , Amneh Shtaiwi , Ahmed Khalil\",\"doi\":\"10.1016/j.compbiolchem.2024.108190\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><p>According to the considered role of lipophilicity-hydrophobicity on organic Schiff base hydrazones, different substituents of phenyl, ethyl, and methyl groups were inserted in the synthetic strategy of diisatin dihydrazones (L1–4). The biochemical enhancement was evaluated depending on their inhibitive potential of the growth power of three human tumor cells, fungi, and bacteria. The biochemical assays assigned the effected role of different substituents of phenyl, ethyl, and methyl groups on the effectiveness of their diisatin dihydrazone reagents. The interacting modes with calf thymus DNA (<em>i.e.</em> Ct-DNA) were studied <em>via</em> viscometric and spectrophotometric titration.</p><p>The organo-reagent L1 with the oxalic derivative assigned a performed inhibitive action for the examined microbes and the human tumor cell lines growing up over the terephthalic (L4) > malonic (L2) > succinic (L3) ones. From <em>K</em><sub>b</sub> = binding constant, and <span><math><mrow><mo>∆</mo><msubsup><mrow><mi>G</mi></mrow><mrow><mi>b</mi></mrow><mrow><mo>≠</mo></mrow></msubsup></mrow></math></span> = Gibb’s free energy values, the binding of interaction within Ct-DNA was evaluated for all compounds (L1–4), in which L1, L3, and L4 assigned the highest reactivity referring to the covalent/non-covalent modes of interaction, as given for (L1–4), 14.32, 13.28, 10.87, and 12.41 × 10<sup>7</sup> mol<sup>−1</sup> dm<sup>3</sup>, and −45<sup>.1</sup>7, −43.24, −43.75, and −44.05 kJ mol<sup>−1</sup>, respectively. DFT and docking studies were achieved to support the current work.</p></div>\",\"PeriodicalId\":10616,\"journal\":{\"name\":\"Computational Biology and Chemistry\",\"volume\":\"113 \",\"pages\":\"Article 108190\"},\"PeriodicalIF\":2.6000,\"publicationDate\":\"2024-08-31\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Computational Biology and Chemistry\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S1476927124001786\",\"RegionNum\":4,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"BIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Computational Biology and Chemistry","FirstCategoryId":"99","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S1476927124001786","RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"BIOLOGY","Score":null,"Total":0}
Substituent effect on the chemical and biological properties of diisatin dihydrazone Schiff bases: DFT and docking studies
According to the considered role of lipophilicity-hydrophobicity on organic Schiff base hydrazones, different substituents of phenyl, ethyl, and methyl groups were inserted in the synthetic strategy of diisatin dihydrazones (L1–4). The biochemical enhancement was evaluated depending on their inhibitive potential of the growth power of three human tumor cells, fungi, and bacteria. The biochemical assays assigned the effected role of different substituents of phenyl, ethyl, and methyl groups on the effectiveness of their diisatin dihydrazone reagents. The interacting modes with calf thymus DNA (i.e. Ct-DNA) were studied via viscometric and spectrophotometric titration.
The organo-reagent L1 with the oxalic derivative assigned a performed inhibitive action for the examined microbes and the human tumor cell lines growing up over the terephthalic (L4) > malonic (L2) > succinic (L3) ones. From Kb = binding constant, and = Gibb’s free energy values, the binding of interaction within Ct-DNA was evaluated for all compounds (L1–4), in which L1, L3, and L4 assigned the highest reactivity referring to the covalent/non-covalent modes of interaction, as given for (L1–4), 14.32, 13.28, 10.87, and 12.41 × 107 mol−1 dm3, and −45.17, −43.24, −43.75, and −44.05 kJ mol−1, respectively. DFT and docking studies were achieved to support the current work.
期刊介绍:
Computational Biology and Chemistry publishes original research papers and review articles in all areas of computational life sciences. High quality research contributions with a major computational component in the areas of nucleic acid and protein sequence research, molecular evolution, molecular genetics (functional genomics and proteomics), theory and practice of either biology-specific or chemical-biology-specific modeling, and structural biology of nucleic acids and proteins are particularly welcome. Exceptionally high quality research work in bioinformatics, systems biology, ecology, computational pharmacology, metabolism, biomedical engineering, epidemiology, and statistical genetics will also be considered.
Given their inherent uncertainty, protein modeling and molecular docking studies should be thoroughly validated. In the absence of experimental results for validation, the use of molecular dynamics simulations along with detailed free energy calculations, for example, should be used as complementary techniques to support the major conclusions. Submissions of premature modeling exercises without additional biological insights will not be considered.
Review articles will generally be commissioned by the editors and should not be submitted to the journal without explicit invitation. However prospective authors are welcome to send a brief (one to three pages) synopsis, which will be evaluated by the editors.