跨物种的综合多组学高通量策略确定了高血糖条件下动脉粥样硬化的潜在关键诊断、预后和治疗靶点。

IF 3.5 2区 生物学 Q3 CELL BIOLOGY
Zhida Shen, Meng Zhao, Jiangting Lu, Huanhuan Chen, Yicheng Zhang, Songzan Chen, Zhaojing Wang, Meihui Wang, Xianglan Liu, Guosheng Fu, He Huang
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引用次数: 0

摘要

糖尿病是动脉粥样硬化(AS)的一个众所周知的危险因素,但其潜在的分子机制仍然未知。免疫反应失调是一个重要原因。事实证明,在临床患者血脂异常的情况下,高血糖会诱导泡沫细胞的形成。探索高糖刺激泡沫细胞加速形成的潜在调控程序意义重大。在体外诱导巨噬细胞衍生的泡沫细胞,并进行高通量测序。利用加权基因共表达网络分析(WGCNA)构建了共表达基因模块。确定了高度相关的模块。通过多种整合策略确定了枢纽基因。所选基因的潜在作用在人类斑块的大量 RNA 和 scRNA 数据集中得到了进一步验证。通过转染 siRNA,进一步探讨了筛选出的基因在泡沫细胞形成过程中的作用。发现有两个模块与高血糖和氧化-LDL均呈正相关。进一步的富集分析证实了棕色模块与强直性脊柱炎之间的关联。棕色模块与巨噬细胞之间的高度相关性得到了确认,并筛选出了 4 个枢纽基因(Aldoa、Creg1、Lgmn 和 Pkm)。在外部批量 RNA 和 scRNA 中的进一步验证显示了所选基因的潜在诊断和治疗价值。此外,生存分析证实了 Aldoa 的预后价值,而在体外敲除 Aldoa 的表达可减轻泡沫细胞的形成。我们系统地研究了巨噬细胞源性泡沫细胞形成过程中高糖和氧化-LDL的协同作用,发现ALDOA可能是这些患者的一个重要诊断、预后和治疗靶点。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Integrated multi-omic high-throughput strategies across-species identified potential key diagnostic, prognostic, and therapeutic targets for atherosclerosis under high glucose conditions.

Integrated multi-omic high-throughput strategies across-species identified potential key diagnostic, prognostic, and therapeutic targets for atherosclerosis under high glucose conditions.

Diabetes is a well-known risk factor for atherosclerosis (AS), but the underlying molecular mechanism remains unknown. The dysregulated immune response is an important reason. High glucose is proven to induce foam cell formation under lipidemia situations in clinical patients. Exploring the potential regulatory programs of accelerated foam cell formation stimulated by high glucose is meaningful. Macrophage-derived foam cells were induced in vitro, and high-throughput sequencing was performed. Coexpression gene modules were constructed using weighted gene co-expression network analysis (WGCNA). Highly related modules were identified. Hub genes were identified by multiple integrative strategies. The potential roles of selected genes were further validated in bulk-RNA and scRNA datasets of human plaques. By transfection of the siRNA, the role of the screened gene during foam cell formation was further explored. Two modules were found to be both positively related to high glucose and ox-LDL. Further enrichment analyses confirmed the association between the brown module and AS. The high correlation between the brown module and macrophages was identified and 4 hub genes (Aldoa, Creg1, Lgmn, and Pkm) were screened. Further validation in external bulk-RNA and scRNA revealed the potential diagnostic and therapeutic value of selected genes. In addition, the survival analysis confirmed the prognostic value of Aldoa while knocking down Aldoa expression alleviated the foam cell formation in vitro. We systematically investigated the synergetic effects of high glucose and ox-LDL during macrophage-derived foam cell formation and identified that ALDOA might be an important diagnostic, prognostic, and therapeutic target in these patients.

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来源期刊
Molecular and Cellular Biochemistry
Molecular and Cellular Biochemistry 生物-细胞生物学
CiteScore
8.30
自引率
2.30%
发文量
293
审稿时长
1.7 months
期刊介绍: Molecular and Cellular Biochemistry: An International Journal for Chemical Biology in Health and Disease publishes original research papers and short communications in all areas of the biochemical sciences, emphasizing novel findings relevant to the biochemical basis of cellular function and disease processes, as well as the mechanics of action of hormones and chemical agents. Coverage includes membrane transport, receptor mechanism, immune response, secretory processes, and cytoskeletal function, as well as biochemical structure-function relationships in the cell. In addition to the reports of original research, the journal publishes state of the art reviews. Specific subjects covered by Molecular and Cellular Biochemistry include cellular metabolism, cellular pathophysiology, enzymology, ion transport, lipid biochemistry, membrane biochemistry, molecular biology, nuclear structure and function, and protein chemistry.
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