利用混合法开发模型,预测生物材料基质中的药物释放量

IF 3.7 2区 化学 Q2 AUTOMATION & CONTROL SYSTEMS
Mohammed Alqarni , Shaimaa Mohammed Al Harthi , Mohammed Abdullah Alzubaidi , Ali Abdullah Alqarni , Bandar Saud Shukr , Hassan Talat Shawli
{"title":"利用混合法开发模型,预测生物材料基质中的药物释放量","authors":"Mohammed Alqarni ,&nbsp;Shaimaa Mohammed Al Harthi ,&nbsp;Mohammed Abdullah Alzubaidi ,&nbsp;Ali Abdullah Alqarni ,&nbsp;Bandar Saud Shukr ,&nbsp;Hassan Talat Shawli","doi":"10.1016/j.chemolab.2024.105216","DOIUrl":null,"url":null,"abstract":"<div><p>A comprehensive multi-scale computational strategy was developed in this study based on mass transfer and machine learning for simulation of drug concentration distribution in a biomaterial matrix. The controlled release was modeled and validated via the hybrid model. Mass transfer equations along with kinetics models were solved numerically and the results were then used for machine learning models. We investigated the performance of three regression models, namely Decision Tree (DT), Random Forest (RF), and Extra Tree (ET) in predicting medicine concentration (C) based on r and z data. Hyper-parameter optimization is conducted using Glowworm Swarm Optimization (GSO). Results revealed high predictive accuracy across all models, with ET demonstrating superior performance, achieving a coefficient of determination value (R<sup>2</sup>) of 0.99854, an RMSE of 1.1446E-05, and a maximum error of 6.49087E-05. DT and RF also exhibit notable performance, with coefficients of determination equal to 0.99571 and 0.99655, respectively. These results highlight the effectiveness of ensemble tree-based methods in accurately predicting chemical concentrations, with Extra Tree (ET) Regression emerging as the most promising model for this specific dataset.</p></div>","PeriodicalId":9774,"journal":{"name":"Chemometrics and Intelligent Laboratory Systems","volume":"253 ","pages":"Article 105216"},"PeriodicalIF":3.7000,"publicationDate":"2024-08-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Model development using hybrid method for prediction of drug release from biomaterial matrix\",\"authors\":\"Mohammed Alqarni ,&nbsp;Shaimaa Mohammed Al Harthi ,&nbsp;Mohammed Abdullah Alzubaidi ,&nbsp;Ali Abdullah Alqarni ,&nbsp;Bandar Saud Shukr ,&nbsp;Hassan Talat Shawli\",\"doi\":\"10.1016/j.chemolab.2024.105216\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><p>A comprehensive multi-scale computational strategy was developed in this study based on mass transfer and machine learning for simulation of drug concentration distribution in a biomaterial matrix. The controlled release was modeled and validated via the hybrid model. Mass transfer equations along with kinetics models were solved numerically and the results were then used for machine learning models. We investigated the performance of three regression models, namely Decision Tree (DT), Random Forest (RF), and Extra Tree (ET) in predicting medicine concentration (C) based on r and z data. Hyper-parameter optimization is conducted using Glowworm Swarm Optimization (GSO). Results revealed high predictive accuracy across all models, with ET demonstrating superior performance, achieving a coefficient of determination value (R<sup>2</sup>) of 0.99854, an RMSE of 1.1446E-05, and a maximum error of 6.49087E-05. DT and RF also exhibit notable performance, with coefficients of determination equal to 0.99571 and 0.99655, respectively. These results highlight the effectiveness of ensemble tree-based methods in accurately predicting chemical concentrations, with Extra Tree (ET) Regression emerging as the most promising model for this specific dataset.</p></div>\",\"PeriodicalId\":9774,\"journal\":{\"name\":\"Chemometrics and Intelligent Laboratory Systems\",\"volume\":\"253 \",\"pages\":\"Article 105216\"},\"PeriodicalIF\":3.7000,\"publicationDate\":\"2024-08-22\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Chemometrics and Intelligent Laboratory Systems\",\"FirstCategoryId\":\"94\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S0169743924001564\",\"RegionNum\":2,\"RegionCategory\":\"化学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"AUTOMATION & CONTROL SYSTEMS\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Chemometrics and Intelligent Laboratory Systems","FirstCategoryId":"94","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S0169743924001564","RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"AUTOMATION & CONTROL SYSTEMS","Score":null,"Total":0}
引用次数: 0

摘要

本研究开发了一种基于传质和机器学习的多尺度综合计算策略,用于模拟生物材料基质中的药物浓度分布。通过混合模型对控释进行了建模和验证。对传质方程和动力学模型进行了数值求解,然后将结果用于机器学习模型。我们研究了三种回归模型,即决策树(DT)、随机森林(RF)和额外树(ET)在基于 r 和 z 数据预测药物浓度(C)方面的性能。使用萤火虫群优化(GSO)对超参数进行了优化。结果表明,所有模型的预测准确率都很高,其中 ET 表现优异,其决定系数 (R2) 为 0.99854,均方根误差为 1.1446E-05,最大误差为 6.49087E-05。DT 和 RF 也表现不俗,它们的判定系数分别为 0.99571 和 0.99655。这些结果凸显了基于集合树的方法在准确预测化学物质浓度方面的有效性,其中额外树(ET)回归是该特定数据集最有前途的模型。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Model development using hybrid method for prediction of drug release from biomaterial matrix

A comprehensive multi-scale computational strategy was developed in this study based on mass transfer and machine learning for simulation of drug concentration distribution in a biomaterial matrix. The controlled release was modeled and validated via the hybrid model. Mass transfer equations along with kinetics models were solved numerically and the results were then used for machine learning models. We investigated the performance of three regression models, namely Decision Tree (DT), Random Forest (RF), and Extra Tree (ET) in predicting medicine concentration (C) based on r and z data. Hyper-parameter optimization is conducted using Glowworm Swarm Optimization (GSO). Results revealed high predictive accuracy across all models, with ET demonstrating superior performance, achieving a coefficient of determination value (R2) of 0.99854, an RMSE of 1.1446E-05, and a maximum error of 6.49087E-05. DT and RF also exhibit notable performance, with coefficients of determination equal to 0.99571 and 0.99655, respectively. These results highlight the effectiveness of ensemble tree-based methods in accurately predicting chemical concentrations, with Extra Tree (ET) Regression emerging as the most promising model for this specific dataset.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
CiteScore
7.50
自引率
7.70%
发文量
169
审稿时长
3.4 months
期刊介绍: Chemometrics and Intelligent Laboratory Systems publishes original research papers, short communications, reviews, tutorials and Original Software Publications reporting on development of novel statistical, mathematical, or computer techniques in Chemistry and related disciplines. Chemometrics is the chemical discipline that uses mathematical and statistical methods to design or select optimal procedures and experiments, and to provide maximum chemical information by analysing chemical data. The journal deals with the following topics: 1) Development of new statistical, mathematical and chemometrical methods for Chemistry and related fields (Environmental Chemistry, Biochemistry, Toxicology, System Biology, -Omics, etc.) 2) Novel applications of chemometrics to all branches of Chemistry and related fields (typical domains of interest are: process data analysis, experimental design, data mining, signal processing, supervised modelling, decision making, robust statistics, mixture analysis, multivariate calibration etc.) Routine applications of established chemometrical techniques will not be considered. 3) Development of new software that provides novel tools or truly advances the use of chemometrical methods. 4) Well characterized data sets to test performance for the new methods and software. The journal complies with International Committee of Medical Journal Editors'' Uniform requirements for manuscripts.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信