{"title":"伪谱在数学生物学中的新用途:了解 HPA 轴的敏感性","authors":"Catherine Drysdale, Matthew J. Colbrook","doi":"arxiv-2408.00845","DOIUrl":null,"url":null,"abstract":"The Hypothalamic-Pituitary-Adrenal (HPA) axis is a major neuroendocrine\nsystem, and its dysregulation is implicated in various diseases. This system\nalso presents interesting mathematical challenges for modeling. We consider a\nnonlinear delay differential equation model and calculate pseudospectra of\nthree different linearizations: a time-dependent Jacobian, linearization around\nthe limit cycle, and dynamic mode decomposition (DMD) analysis of Koopman\noperators (global linearization). The time-dependent Jacobian provided insight\ninto experimental phenomena, explaining why rats respond differently to\nperturbations during corticosterone secretion's upward versus downward slopes.\nWe developed new mathematical techniques for the other two linearizations to\ncalculate pseudospectra on Banach spaces and apply DMD to delay differential\nequations, respectively. These methods helped establish local and global limit\ncycle stability and study transients. Additionally, we discuss using\npseudospectra to substantiate the model in experimental contexts and establish\nbio-variability via data-driven methods. This work is the first to utilize\npseudospectra to explore the HPA axis.","PeriodicalId":501170,"journal":{"name":"arXiv - QuanBio - Subcellular Processes","volume":"10 1","pages":""},"PeriodicalIF":0.0000,"publicationDate":"2024-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"A Novel Use of Pseudospectra in Mathematical Biology: Understanding HPA Axis Sensitivity\",\"authors\":\"Catherine Drysdale, Matthew J. Colbrook\",\"doi\":\"arxiv-2408.00845\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"The Hypothalamic-Pituitary-Adrenal (HPA) axis is a major neuroendocrine\\nsystem, and its dysregulation is implicated in various diseases. This system\\nalso presents interesting mathematical challenges for modeling. We consider a\\nnonlinear delay differential equation model and calculate pseudospectra of\\nthree different linearizations: a time-dependent Jacobian, linearization around\\nthe limit cycle, and dynamic mode decomposition (DMD) analysis of Koopman\\noperators (global linearization). The time-dependent Jacobian provided insight\\ninto experimental phenomena, explaining why rats respond differently to\\nperturbations during corticosterone secretion's upward versus downward slopes.\\nWe developed new mathematical techniques for the other two linearizations to\\ncalculate pseudospectra on Banach spaces and apply DMD to delay differential\\nequations, respectively. These methods helped establish local and global limit\\ncycle stability and study transients. Additionally, we discuss using\\npseudospectra to substantiate the model in experimental contexts and establish\\nbio-variability via data-driven methods. This work is the first to utilize\\npseudospectra to explore the HPA axis.\",\"PeriodicalId\":501170,\"journal\":{\"name\":\"arXiv - QuanBio - Subcellular Processes\",\"volume\":\"10 1\",\"pages\":\"\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2024-08-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"arXiv - QuanBio - Subcellular Processes\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/arxiv-2408.00845\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"arXiv - QuanBio - Subcellular Processes","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/arxiv-2408.00845","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
A Novel Use of Pseudospectra in Mathematical Biology: Understanding HPA Axis Sensitivity
The Hypothalamic-Pituitary-Adrenal (HPA) axis is a major neuroendocrine
system, and its dysregulation is implicated in various diseases. This system
also presents interesting mathematical challenges for modeling. We consider a
nonlinear delay differential equation model and calculate pseudospectra of
three different linearizations: a time-dependent Jacobian, linearization around
the limit cycle, and dynamic mode decomposition (DMD) analysis of Koopman
operators (global linearization). The time-dependent Jacobian provided insight
into experimental phenomena, explaining why rats respond differently to
perturbations during corticosterone secretion's upward versus downward slopes.
We developed new mathematical techniques for the other two linearizations to
calculate pseudospectra on Banach spaces and apply DMD to delay differential
equations, respectively. These methods helped establish local and global limit
cycle stability and study transients. Additionally, we discuss using
pseudospectra to substantiate the model in experimental contexts and establish
bio-variability via data-driven methods. This work is the first to utilize
pseudospectra to explore the HPA axis.