{"title":"ProS2Vi:可视化蛋白质二级结构的 Python 工具","authors":"Luckman Qasim, Laleh Alisaraie","doi":"arxiv-2408.03436","DOIUrl":null,"url":null,"abstract":"The Protein Secondary Structure Visualizer ProS2Vi is a novel Python-based\nvisualization tool designed to enhance the analysis and accessibility of\nprotein secondary structures calculated and identified by the Dictionary of\nSecondary Structure of Proteins algorithm. Leveraging robust Python libraries\nsuch as Biopython for data handling, Flask, for Graphical User Interface,\nJinja2, and wkhtmltopdf for visualization, ProS2Vi offers a modern and\nintuitive representation for visualization of the DSSP assigned secondary\nstructures to each residue of any proteins amino acid sequence. Significant\nfeatures of ProS2Vi include customizable icon colors, the number of residues\nper line, and the ability to export visualizations as scalable PDFs, enhancing\nboth visual appeal and functional versatility through a user-friendly GUI. We\nhave designed ProS2Vi specifically for secure and local operation, which\nsignificantly increases security when dealing with novel protein data.","PeriodicalId":501022,"journal":{"name":"arXiv - QuanBio - Biomolecules","volume":"68 1","pages":""},"PeriodicalIF":0.0000,"publicationDate":"2024-08-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"ProS2Vi: a Python Tool for Visualizing Proteins Secondary Structure\",\"authors\":\"Luckman Qasim, Laleh Alisaraie\",\"doi\":\"arxiv-2408.03436\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"The Protein Secondary Structure Visualizer ProS2Vi is a novel Python-based\\nvisualization tool designed to enhance the analysis and accessibility of\\nprotein secondary structures calculated and identified by the Dictionary of\\nSecondary Structure of Proteins algorithm. Leveraging robust Python libraries\\nsuch as Biopython for data handling, Flask, for Graphical User Interface,\\nJinja2, and wkhtmltopdf for visualization, ProS2Vi offers a modern and\\nintuitive representation for visualization of the DSSP assigned secondary\\nstructures to each residue of any proteins amino acid sequence. Significant\\nfeatures of ProS2Vi include customizable icon colors, the number of residues\\nper line, and the ability to export visualizations as scalable PDFs, enhancing\\nboth visual appeal and functional versatility through a user-friendly GUI. We\\nhave designed ProS2Vi specifically for secure and local operation, which\\nsignificantly increases security when dealing with novel protein data.\",\"PeriodicalId\":501022,\"journal\":{\"name\":\"arXiv - QuanBio - Biomolecules\",\"volume\":\"68 1\",\"pages\":\"\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2024-08-06\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"arXiv - QuanBio - Biomolecules\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/arxiv-2408.03436\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"arXiv - QuanBio - Biomolecules","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/arxiv-2408.03436","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
ProS2Vi: a Python Tool for Visualizing Proteins Secondary Structure
The Protein Secondary Structure Visualizer ProS2Vi is a novel Python-based
visualization tool designed to enhance the analysis and accessibility of
protein secondary structures calculated and identified by the Dictionary of
Secondary Structure of Proteins algorithm. Leveraging robust Python libraries
such as Biopython for data handling, Flask, for Graphical User Interface,
Jinja2, and wkhtmltopdf for visualization, ProS2Vi offers a modern and
intuitive representation for visualization of the DSSP assigned secondary
structures to each residue of any proteins amino acid sequence. Significant
features of ProS2Vi include customizable icon colors, the number of residues
per line, and the ability to export visualizations as scalable PDFs, enhancing
both visual appeal and functional versatility through a user-friendly GUI. We
have designed ProS2Vi specifically for secure and local operation, which
significantly increases security when dealing with novel protein data.