ProS2Vi:可视化蛋白质二级结构的 Python 工具

Luckman Qasim, Laleh Alisaraie
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引用次数: 0

摘要

蛋白质二级结构可视化工具 ProS2Vi 是一款基于 Python 的新型可视化工具,旨在加强对通过蛋白质二级结构字典算法计算和确定的蛋白质二级结构的分析和访问。ProS2Vi 利用强大的 Python 库(如用于数据处理的 Biopython 库、用于图形用户界面的 Flask 库、用于可视化的 Jinja2 库和 wkhtmltopdf 库),为任何蛋白质氨基酸序列中每个残基的 DSSP 指定二级结构的可视化提供了现代化的直观表示。ProS2Vi 的显著特点包括可定制的图标颜色、每行的残基数量,以及将可视化导出为可缩放 PDF 的功能,通过用户友好的图形用户界面增强了视觉吸引力和功能多样性。我们专门为安全和本地操作设计了 ProS2Vi,这大大提高了处理新型蛋白质数据时的安全性。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
ProS2Vi: a Python Tool for Visualizing Proteins Secondary Structure
The Protein Secondary Structure Visualizer ProS2Vi is a novel Python-based visualization tool designed to enhance the analysis and accessibility of protein secondary structures calculated and identified by the Dictionary of Secondary Structure of Proteins algorithm. Leveraging robust Python libraries such as Biopython for data handling, Flask, for Graphical User Interface, Jinja2, and wkhtmltopdf for visualization, ProS2Vi offers a modern and intuitive representation for visualization of the DSSP assigned secondary structures to each residue of any proteins amino acid sequence. Significant features of ProS2Vi include customizable icon colors, the number of residues per line, and the ability to export visualizations as scalable PDFs, enhancing both visual appeal and functional versatility through a user-friendly GUI. We have designed ProS2Vi specifically for secure and local operation, which significantly increases security when dealing with novel protein data.
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