内源性代谢物对工程化 T7 RNA 聚合酶的动态调控

Zachary T. Baumer, Matilda Newton, Lina Löfstrand, Genesis Nicole Carpio Paucar, Natalie G. Farny, Timothy A. Whitehead
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引用次数: 0

摘要

许多酶的活性受内源性代谢物的翻译后调控。设计配体控制转录等基本活动将推进生物过程的预测控制,这是合成生物学的一个基本目标。在这里,我们证明了全长、单亚基 T7 衍生 RNA 聚合酶(T7 RNAP)可受生理相关浓度的吲哚控制。我们利用合理设计和定向进化鉴定出了 T7 RNAP 变体,它们在没有吲哚的情况下转录活性最小,而在 EC50 为 344 µM 的情况下活性增加了 29 倍。吲哚在外源、内源和细胞间控制 T7 依赖性基因的表达。我们还证明了吲哚依赖性噬菌体的活力和反式繁殖。我们还展示了不同吲哚的特异性、T7 启动子的特异性以及对不同细菌的可移植性。我们的配体激活 RNA 聚合酶(LARPs)代表了一种新的化学诱导平台,可立即用于新型合成生物学应用,包括调节合成共培养物。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Dynamic regulation of engineered T7 RNA polymerases by endogenous metabolites
For many enzymes, activity is regulated post-translationally by endogenous metabolites. Designing liganded control of essential activities like transcription would advance predictive control of biological processes, a fundamental goal of synthetic biology. Here we demonstrate that full-length, single subunit T7-derived RNA polymerases (T7 RNAP) can be controlled by physiologically relevant concentrations of indoles. We used rational design and directed evolution to identify T7 RNAP variants with minimal transcriptional activity in the absence of indole, and a 29-fold increase in activity with an EC50 of 344 µM. Indoles control T7-dependent gene expression exogenously, endogenously, and inter-cellularly. We also demonstrate indole-dependent bacteriophage viability and propagation in trans. Specificity of different indoles, T7 promoter specificities, and portability to different bacteria are shown. Our ligand activated RNA polymerases (LARPs) represent a new chemically inducible platform immediately deployable for novel synthetic biology applications, including for modulation of synthetic co-cultures.
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