Shun Nanjo, Arifin, Hayato Maeda, Yoshihiro Hayashi, Kan Hatakeyama-Sato, Ryoji Himeno, Teruaki Hayakawa, Ryo Yoshida
{"title":"SPACIER:将全自动全原子经典分子动力学集成到机器学习管道中的按需聚合物设计","authors":"Shun Nanjo, Arifin, Hayato Maeda, Yoshihiro Hayashi, Kan Hatakeyama-Sato, Ryoji Himeno, Teruaki Hayakawa, Ryo Yoshida","doi":"arxiv-2408.05135","DOIUrl":null,"url":null,"abstract":"Machine learning has rapidly advanced the design and discovery of new\nmaterials with targeted applications in various systems. First-principles\ncalculations and other computer experiments have been integrated into material\ndesign pipelines to address the lack of experimental data and the limitations\nof interpolative machine learning predictors. However, the enormous\ncomputational costs and technical challenges of automating computer experiments\nfor polymeric materials have limited the availability of open-source automated\npolymer design systems that integrate molecular simulations and machine\nlearning. We developed SPACIER, an open-source software program that integrates\nRadonPy, a Python library for fully automated polymer property calculations\nbased on all-atom classical molecular dynamics into a Bayesian\noptimization-based polymer design system to overcome these challenges. As a\nproof-of-concept study, we successfully synthesized optical polymers that\nsurpass the Pareto boundary formed by the tradeoff between the refractive index\nand Abbe number.","PeriodicalId":501369,"journal":{"name":"arXiv - PHYS - Computational Physics","volume":"3 1","pages":""},"PeriodicalIF":0.0000,"publicationDate":"2024-08-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"SPACIER: On-Demand Polymer Design with Fully Automated All-Atom Classical Molecular Dynamics Integrated into Machine Learning Pipelines\",\"authors\":\"Shun Nanjo, Arifin, Hayato Maeda, Yoshihiro Hayashi, Kan Hatakeyama-Sato, Ryoji Himeno, Teruaki Hayakawa, Ryo Yoshida\",\"doi\":\"arxiv-2408.05135\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"Machine learning has rapidly advanced the design and discovery of new\\nmaterials with targeted applications in various systems. First-principles\\ncalculations and other computer experiments have been integrated into material\\ndesign pipelines to address the lack of experimental data and the limitations\\nof interpolative machine learning predictors. However, the enormous\\ncomputational costs and technical challenges of automating computer experiments\\nfor polymeric materials have limited the availability of open-source automated\\npolymer design systems that integrate molecular simulations and machine\\nlearning. We developed SPACIER, an open-source software program that integrates\\nRadonPy, a Python library for fully automated polymer property calculations\\nbased on all-atom classical molecular dynamics into a Bayesian\\noptimization-based polymer design system to overcome these challenges. As a\\nproof-of-concept study, we successfully synthesized optical polymers that\\nsurpass the Pareto boundary formed by the tradeoff between the refractive index\\nand Abbe number.\",\"PeriodicalId\":501369,\"journal\":{\"name\":\"arXiv - PHYS - Computational Physics\",\"volume\":\"3 1\",\"pages\":\"\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2024-08-09\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"arXiv - PHYS - Computational Physics\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/arxiv-2408.05135\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"arXiv - PHYS - Computational Physics","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/arxiv-2408.05135","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
SPACIER: On-Demand Polymer Design with Fully Automated All-Atom Classical Molecular Dynamics Integrated into Machine Learning Pipelines
Machine learning has rapidly advanced the design and discovery of new
materials with targeted applications in various systems. First-principles
calculations and other computer experiments have been integrated into material
design pipelines to address the lack of experimental data and the limitations
of interpolative machine learning predictors. However, the enormous
computational costs and technical challenges of automating computer experiments
for polymeric materials have limited the availability of open-source automated
polymer design systems that integrate molecular simulations and machine
learning. We developed SPACIER, an open-source software program that integrates
RadonPy, a Python library for fully automated polymer property calculations
based on all-atom classical molecular dynamics into a Bayesian
optimization-based polymer design system to overcome these challenges. As a
proof-of-concept study, we successfully synthesized optical polymers that
surpass the Pareto boundary formed by the tradeoff between the refractive index
and Abbe number.