使用嵌套采样算法和分子动力学模拟的梅赛德斯-奔驰水模型相图

IF 2.8 3区 工程技术 Q3 CHEMISTRY, PHYSICAL
Peter Ogrin, Tomaz Urbic
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引用次数: 0

摘要

梅赛德斯-奔驰(MB)水模型在解释水的性质方面颇受欢迎,但完整的相图尚未公布。在 MB 模型中,水分子被模拟为二维伦纳德-琼斯圆盘,三个取向相关的氢键臂排列成 MB 标志的样子。嵌套采样(NS)是一种强大的参数空间采样算法,可直接计算分割函数。NS 可用来对原子系统的平衡热力学进行采样,并能以绝对值获得所有热力学量,包括绝对自由能和绝对熵。在这里,NS 被用来计算简单的二维梅赛德斯-奔驰(MB)水模型的相图。NS 中使用了 32 个水粒子。虽然这个粒子数与模拟结果足够一致,但随着一些平衡线开始移动,较少粒子的结果慢慢开始与使用 32 个粒子的 NS 结果相背离。通过结合 NS 和分子动力学(MD)模拟的结果,找到并确定了不同的相。总共观察到 5 种不同的固相、3 种液相和 1 种气相。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
The phase diagram of Mercedes Benz model of water using nested sampling algorithm and molecular dynamics simulations

The Mercedes Benz (MB) model of water is quite popular for explaining the properties of water, but the complete phase diagram has not yet been published. In the MB model, water molecules are modelled as two-dimensional Lennard-Jones discs, with three orientation-dependent hydrogen-bonding arms arranged as in the MB logo. Nested Sampling (NS) is a powerful sampling algorithm for the parameter space that directly calculates the partition function. NS can be used for sampling the equilibrium thermodynamics of atomistic systems and allows access to all thermodynamic quantities in absolute terms, including absolute free energies and absolute entropies. Here, NS is used to calculate the phase diagram of the simple two-dimensional Mercedes-Benz (MB) model of water. 32 water particles were used in NS. While this number of particles provides sufficient agreement with the simulations, the results from fewer particles slowly begin to diverge from the result from NS with 32 particles as some of the equilibrium lines begin to shift. By combining the results from NS and molecular dynamics (MD) simulations, different phases were located and identified. In total, 5 different solid phases, 3 liquid phases and one gaseous phase were observed.

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来源期刊
Fluid Phase Equilibria
Fluid Phase Equilibria 工程技术-工程:化工
CiteScore
5.30
自引率
15.40%
发文量
223
审稿时长
53 days
期刊介绍: Fluid Phase Equilibria publishes high-quality papers dealing with experimental, theoretical, and applied research related to equilibrium and transport properties of fluids, solids, and interfaces. Subjects of interest include physical/phase and chemical equilibria; equilibrium and nonequilibrium thermophysical properties; fundamental thermodynamic relations; and stability. The systems central to the journal include pure substances and mixtures of organic and inorganic materials, including polymers, biochemicals, and surfactants with sufficient characterization of composition and purity for the results to be reproduced. Alloys are of interest only when thermodynamic studies are included, purely material studies will not be considered. In all cases, authors are expected to provide physical or chemical interpretations of the results. Experimental research can include measurements under all conditions of temperature, pressure, and composition, including critical and supercritical. Measurements are to be associated with systems and conditions of fundamental or applied interest, and may not be only a collection of routine data, such as physical property or solubility measurements at limited pressures and temperatures close to ambient, or surfactant studies focussed strictly on micellisation or micelle structure. Papers reporting common data must be accompanied by new physical insights and/or contemporary or new theory or techniques.
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