{"title":"利用三个 iEEG 数据集将通道重排策略与双 CNN-LSTM 结合用于癫痫发作预测","authors":"Xiaoshuang Wang;Ziheng Gao;Meiyan Zhang;Ying Wang;Lin Yang;Jianwen Lin;Tommi Kärkkäinen;Fengyu Cong","doi":"10.1109/JBHI.2024.3438829","DOIUrl":null,"url":null,"abstract":"<italic>Objective:</i>\n Intracranial electroencephalogram (iEEG) signals are generally recorded using multiple channels, and channel selection is therefore a significant means in studying iEEG-based seizure prediction. For \n<italic>n</i>\n channels, \n<inline-formula><tex-math>$2^{\\text{n}}{-1}$</tex-math></inline-formula>\n channel cases can be generated for selection. However, by this means, an increase in \n<italic>n</i>\n can cause an exponential increase in computational consumption, which may result in a failure of channel selection when \n<italic>n</i>\n is too large. Hence, it is necessary to explore reasonable channel selection strategies under the premise of controlling computational consumption and ensuring high classification accuracy. Given this, we propose a novel method of channel reordering strategy combined with dual CNN-LSTM for effectively predicting seizures. \n<italic>Method:</i>\n First, for each patient with \n<italic>n</i>\n channels, interictal and preictal iEEG samples from each single channel are input into the CNN-LSTM model for classification. Then, the F1-score of each single channel is calculated, and the channels are reordered in descending order according to the size of F1-scores (\n<italic>channel reordering strategy</i>\n). Next, iEEG signals with an increasing number of channels are successively fed into the CNN-LSTM model for classification again. Finally, according to the classification results from \n<italic>n</i>\n channel cases, the channel case with the highest classification rate is selected. \n<italic>Results:</i>\n Our method is evaluated on the three iEEG datasets: the Freiburg, the SWEC-ETHZ and the American Epilepsy Society Seizure Prediction Challenge (AES-SPC). At the event-based level, the sensitivities of 100%, 100% and 90.5%, and the false prediction rates (FPRs) of 0.10/h, 0/h and 0.47/h, are achieved for the three datasets, respectively. Moreover, compared to an unspecific random predictor, our method also shows a better performance for all patients and dogs from the three datasets. At the segment-based level, the sensitivities-specificities-accuracies-AUCs of 88.1%–94.0%–93.5%–0.9101, 99.1%–99.7%–99.6%–0.9935, and 69.2%–79.9%–78.2%–0.7373, are attained for the three datasets, respectively. \n<italic>Conclusion:</i>\n Our method can effectively predict seizures and address the challenge of an excessive number of channels during channel selection.","PeriodicalId":13073,"journal":{"name":"IEEE Journal of Biomedical and Health Informatics","volume":null,"pages":null},"PeriodicalIF":6.7000,"publicationDate":"2024-08-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Combination of Channel Reordering Strategy and Dual CNN-LSTM for Epileptic Seizure Prediction Using Three iEEG Datasets\",\"authors\":\"Xiaoshuang Wang;Ziheng Gao;Meiyan Zhang;Ying Wang;Lin Yang;Jianwen Lin;Tommi Kärkkäinen;Fengyu Cong\",\"doi\":\"10.1109/JBHI.2024.3438829\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<italic>Objective:</i>\\n Intracranial electroencephalogram (iEEG) signals are generally recorded using multiple channels, and channel selection is therefore a significant means in studying iEEG-based seizure prediction. For \\n<italic>n</i>\\n channels, \\n<inline-formula><tex-math>$2^{\\\\text{n}}{-1}$</tex-math></inline-formula>\\n channel cases can be generated for selection. However, by this means, an increase in \\n<italic>n</i>\\n can cause an exponential increase in computational consumption, which may result in a failure of channel selection when \\n<italic>n</i>\\n is too large. Hence, it is necessary to explore reasonable channel selection strategies under the premise of controlling computational consumption and ensuring high classification accuracy. Given this, we propose a novel method of channel reordering strategy combined with dual CNN-LSTM for effectively predicting seizures. \\n<italic>Method:</i>\\n First, for each patient with \\n<italic>n</i>\\n channels, interictal and preictal iEEG samples from each single channel are input into the CNN-LSTM model for classification. Then, the F1-score of each single channel is calculated, and the channels are reordered in descending order according to the size of F1-scores (\\n<italic>channel reordering strategy</i>\\n). Next, iEEG signals with an increasing number of channels are successively fed into the CNN-LSTM model for classification again. Finally, according to the classification results from \\n<italic>n</i>\\n channel cases, the channel case with the highest classification rate is selected. \\n<italic>Results:</i>\\n Our method is evaluated on the three iEEG datasets: the Freiburg, the SWEC-ETHZ and the American Epilepsy Society Seizure Prediction Challenge (AES-SPC). At the event-based level, the sensitivities of 100%, 100% and 90.5%, and the false prediction rates (FPRs) of 0.10/h, 0/h and 0.47/h, are achieved for the three datasets, respectively. Moreover, compared to an unspecific random predictor, our method also shows a better performance for all patients and dogs from the three datasets. At the segment-based level, the sensitivities-specificities-accuracies-AUCs of 88.1%–94.0%–93.5%–0.9101, 99.1%–99.7%–99.6%–0.9935, and 69.2%–79.9%–78.2%–0.7373, are attained for the three datasets, respectively. \\n<italic>Conclusion:</i>\\n Our method can effectively predict seizures and address the challenge of an excessive number of channels during channel selection.\",\"PeriodicalId\":13073,\"journal\":{\"name\":\"IEEE Journal of Biomedical and Health Informatics\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":6.7000,\"publicationDate\":\"2024-08-06\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"IEEE Journal of Biomedical and Health Informatics\",\"FirstCategoryId\":\"5\",\"ListUrlMain\":\"https://ieeexplore.ieee.org/document/10623896/\",\"RegionNum\":2,\"RegionCategory\":\"医学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"COMPUTER SCIENCE, INFORMATION SYSTEMS\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"IEEE Journal of Biomedical and Health Informatics","FirstCategoryId":"5","ListUrlMain":"https://ieeexplore.ieee.org/document/10623896/","RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"COMPUTER SCIENCE, INFORMATION SYSTEMS","Score":null,"Total":0}
引用次数: 0
摘要
目的:颅内脑电图(iEEG)信号一般使用多通道记录,因此通道选择是研究基于 iEEG 的癫痫发作预测的重要手段。对于 n 个通道,可生成 2n-1 个通道案例供选择。然而,通过这种方法,n 的增加会导致计算消耗呈指数增长,当 n 过大时,可能会导致通道选择失败。因此,有必要在控制计算消耗和保证高分类精度的前提下,探索合理的信道选择策略。有鉴于此,我们提出了一种结合双 CNN-LSTM 的通道重排策略的新方法,以有效预测癫痫发作:方法:首先,针对每个患者的 n 个通道,将每个单通道的发作间期和发作前 iEEG 样本输入 CNN-LSTM 模型进行分类。然后,计算每个单通道的 F1 分数,并根据 F1 分数的大小对通道进行降序重排(通道重排策略)。接着,将通道数不断增加的 iEEG 信号依次输入 CNN-LSTM 模型,再次进行分类。最后,根据 n 个信道的分类结果,选出分类率最高的信道:我们的方法在三个 iEEG 数据集上进行了评估:弗莱堡、SWEC-ETHZ 和美国癫痫协会癫痫发作预测挑战赛(AES-SPC)。在基于事件的层面上,三个数据集的灵敏度分别为 100%、100% 和 90.5%,错误预测率 (FPR) 分别为 0.10/h、0/h 和 0.47/h。此外,与非特异性随机预测器相比,我们的方法对三个数据集中的所有病人和狗都显示出更好的性能。在基于区段的水平上,三个数据集的灵敏度-特异性-准确性-AUC 分别为 88.1%-94.0%-93.5%-0.9101、99.1%-99.7%-99.6%-0.9935 和 69.2%-79.9%-78.2%-0.7373:结论:我们的方法能有效预测癫痫发作,并能解决通道选择过程中通道数量过多的难题。
Combination of Channel Reordering Strategy and Dual CNN-LSTM for Epileptic Seizure Prediction Using Three iEEG Datasets
Objective:
Intracranial electroencephalogram (iEEG) signals are generally recorded using multiple channels, and channel selection is therefore a significant means in studying iEEG-based seizure prediction. For
n
channels,
$2^{\text{n}}{-1}$
channel cases can be generated for selection. However, by this means, an increase in
n
can cause an exponential increase in computational consumption, which may result in a failure of channel selection when
n
is too large. Hence, it is necessary to explore reasonable channel selection strategies under the premise of controlling computational consumption and ensuring high classification accuracy. Given this, we propose a novel method of channel reordering strategy combined with dual CNN-LSTM for effectively predicting seizures.
Method:
First, for each patient with
n
channels, interictal and preictal iEEG samples from each single channel are input into the CNN-LSTM model for classification. Then, the F1-score of each single channel is calculated, and the channels are reordered in descending order according to the size of F1-scores (
channel reordering strategy
). Next, iEEG signals with an increasing number of channels are successively fed into the CNN-LSTM model for classification again. Finally, according to the classification results from
n
channel cases, the channel case with the highest classification rate is selected.
Results:
Our method is evaluated on the three iEEG datasets: the Freiburg, the SWEC-ETHZ and the American Epilepsy Society Seizure Prediction Challenge (AES-SPC). At the event-based level, the sensitivities of 100%, 100% and 90.5%, and the false prediction rates (FPRs) of 0.10/h, 0/h and 0.47/h, are achieved for the three datasets, respectively. Moreover, compared to an unspecific random predictor, our method also shows a better performance for all patients and dogs from the three datasets. At the segment-based level, the sensitivities-specificities-accuracies-AUCs of 88.1%–94.0%–93.5%–0.9101, 99.1%–99.7%–99.6%–0.9935, and 69.2%–79.9%–78.2%–0.7373, are attained for the three datasets, respectively.
Conclusion:
Our method can effectively predict seizures and address the challenge of an excessive number of channels during channel selection.
期刊介绍:
IEEE Journal of Biomedical and Health Informatics publishes original papers presenting recent advances where information and communication technologies intersect with health, healthcare, life sciences, and biomedicine. Topics include acquisition, transmission, storage, retrieval, management, and analysis of biomedical and health information. The journal covers applications of information technologies in healthcare, patient monitoring, preventive care, early disease diagnosis, therapy discovery, and personalized treatment protocols. It explores electronic medical and health records, clinical information systems, decision support systems, medical and biological imaging informatics, wearable systems, body area/sensor networks, and more. Integration-related topics like interoperability, evidence-based medicine, and secure patient data are also addressed.