Adrián Gómez-Sánchez, Raffaele Vitale, Pablo Loza-Alvarez, Cyril Ruckebusch, Anna de Juan
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Recently, a novel algorithmic strategy to constrain trilinearity in MCR-ALS in the presence of missing data was developed. This strategy relies on the sequential imposition of a classical trilinearity restriction on different submatrices of the original investigated dataset, but, although effective, was found to be particularly slow and requires a proper submatrix selection criterion. In this paper, a much simpler implementation of the trilinearity constraint in MCR-ALS capable of handling systematic patterns of missing data and based on the principles of the Nonlinear Iterative Partial Least Squares (NIPALS) algorithm is proposed. This novel approach preserves the trilinearity of the retrieved component profiles without requiring data imputation or subset selection steps and, as with all other constraints designed for MCR-ALS, offers the flexibility to be applied component-wise or data block-wise, providing hybrid bilinear/trilinear models. Furthermore, it can be easily extended to cope with any trilinear or higher-order dataset with whatever pattern of missing values.</p>","PeriodicalId":15274,"journal":{"name":"Journal of Chemometrics","volume":"38 11","pages":""},"PeriodicalIF":2.3000,"publicationDate":"2024-08-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/cem.3584","citationCount":"0","resultStr":"{\"title\":\"The MCR-ALS Trilinearity Constraint for Data With Missing Values\",\"authors\":\"Adrián Gómez-Sánchez, Raffaele Vitale, Pablo Loza-Alvarez, Cyril Ruckebusch, Anna de Juan\",\"doi\":\"10.1002/cem.3584\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p>Trilinearity is a property of some chemical data that leads to unique decompositions when curve resolution or multiway decomposition methods are used. Curve resolution algorithms, such as Multivariate Curve Resolution–Alternating Least Squares (MCR-ALS), can provide trilinear models by implementing the trilinearity condition as a constraint. However, some trilinear analytical measurements, such as excitation–emission matrix (EEM) measurements, usually exhibit systematic patterns of missing data due to the nature of the technique, which imply a challenge to the classical implementation of the trilinearity constraint. In this instance, extrapolation or imputation methodologies may not provide optimal results. Recently, a novel algorithmic strategy to constrain trilinearity in MCR-ALS in the presence of missing data was developed. This strategy relies on the sequential imposition of a classical trilinearity restriction on different submatrices of the original investigated dataset, but, although effective, was found to be particularly slow and requires a proper submatrix selection criterion. In this paper, a much simpler implementation of the trilinearity constraint in MCR-ALS capable of handling systematic patterns of missing data and based on the principles of the Nonlinear Iterative Partial Least Squares (NIPALS) algorithm is proposed. This novel approach preserves the trilinearity of the retrieved component profiles without requiring data imputation or subset selection steps and, as with all other constraints designed for MCR-ALS, offers the flexibility to be applied component-wise or data block-wise, providing hybrid bilinear/trilinear models. Furthermore, it can be easily extended to cope with any trilinear or higher-order dataset with whatever pattern of missing values.</p>\",\"PeriodicalId\":15274,\"journal\":{\"name\":\"Journal of Chemometrics\",\"volume\":\"38 11\",\"pages\":\"\"},\"PeriodicalIF\":2.3000,\"publicationDate\":\"2024-08-02\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://onlinelibrary.wiley.com/doi/epdf/10.1002/cem.3584\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of Chemometrics\",\"FirstCategoryId\":\"92\",\"ListUrlMain\":\"https://onlinelibrary.wiley.com/doi/10.1002/cem.3584\",\"RegionNum\":4,\"RegionCategory\":\"化学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"SOCIAL WORK\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Chemometrics","FirstCategoryId":"92","ListUrlMain":"https://onlinelibrary.wiley.com/doi/10.1002/cem.3584","RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"SOCIAL WORK","Score":null,"Total":0}
The MCR-ALS Trilinearity Constraint for Data With Missing Values
Trilinearity is a property of some chemical data that leads to unique decompositions when curve resolution or multiway decomposition methods are used. Curve resolution algorithms, such as Multivariate Curve Resolution–Alternating Least Squares (MCR-ALS), can provide trilinear models by implementing the trilinearity condition as a constraint. However, some trilinear analytical measurements, such as excitation–emission matrix (EEM) measurements, usually exhibit systematic patterns of missing data due to the nature of the technique, which imply a challenge to the classical implementation of the trilinearity constraint. In this instance, extrapolation or imputation methodologies may not provide optimal results. Recently, a novel algorithmic strategy to constrain trilinearity in MCR-ALS in the presence of missing data was developed. This strategy relies on the sequential imposition of a classical trilinearity restriction on different submatrices of the original investigated dataset, but, although effective, was found to be particularly slow and requires a proper submatrix selection criterion. In this paper, a much simpler implementation of the trilinearity constraint in MCR-ALS capable of handling systematic patterns of missing data and based on the principles of the Nonlinear Iterative Partial Least Squares (NIPALS) algorithm is proposed. This novel approach preserves the trilinearity of the retrieved component profiles without requiring data imputation or subset selection steps and, as with all other constraints designed for MCR-ALS, offers the flexibility to be applied component-wise or data block-wise, providing hybrid bilinear/trilinear models. Furthermore, it can be easily extended to cope with any trilinear or higher-order dataset with whatever pattern of missing values.
期刊介绍:
The Journal of Chemometrics is devoted to the rapid publication of original scientific papers, reviews and short communications on fundamental and applied aspects of chemometrics. It also provides a forum for the exchange of information on meetings and other news relevant to the growing community of scientists who are interested in chemometrics and its applications. Short, critical review papers are a particularly important feature of the journal, in view of the multidisciplinary readership at which it is aimed.