Web-BO:提高化学贝叶斯优化(BO)的可及性

IF 4.3 3区 材料科学 Q1 ENGINEERING, ELECTRICAL & ELECTRONIC
Austin Mroz, Piotr N Toka, Antonio Del Rio Chanona, Kim E. Jelfs
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引用次数: 0

摘要

从历史上看,化学发现过程主要是一个试验和改进的过程,即在化学知识的指导下,对化学体系进行微小的修改,目的是优化目标特性或特性组合。虽然试验和改进方法经常取得成功,尤其是在偶然性的帮助下,但这种方法需要耗费大量的时间和资源。更复杂的是,理论上可以探索的可用化学空间非常广阔。由于我们面临着近乎无限的可能性和有限的资源,我们需要改进搜索方法,以有效地实现理想的最优结果,例如,化学体系表现出一种或几种目标特性。在贝叶斯优化(BO)框架内,先验知识被用来为搜索过程提供信息和指导,以优化实现所需的化学目标,例如使产量最大化的最佳反应条件,或表现出更高催化活性的最佳催化剂。虽然 BO 算法功能强大,但在实际应用中主要局限于通过各种应用程序接口(API)进行连接,这就需要高级编码经验和为每个优化任务定制脚本。此外,通过图形用户界面(GUI)将这些算法与电子实验笔记本无缝连接起来也很有难度。最终,这限制了 BO 算法的可访问性。在此,我们提出了 Web-BO,一种支持化学优化任务中 BO 的图形用户界面。我们使用一个开源数据集和相关模拟器演示了它的性能,并将该平台与现有的电子实验笔记本 datalab 相连接。我们希望通过提供基于图形用户界面的 BO 服务,提高化学领域数据驱动优化工具的可访问性;https://suprashare.rcs.ic.ac.uk/web-bo/。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Web-BO: Towards increased accessibility of Bayesian optimisation (BO) for chemistry
Historically, the chemical discovery process has predominantly been a matter of trial-and-improvement, where small modifications are made to a chemical system, guided by chemical knowledge, with the aim of optimising towards a target property or combination of properties. While a trial-and-improvement approach is frequently successful, especially when assisted by the help of serendipity, the approach is incredibly time- and resource-intensive. Complicating this further, the available chemical space that could, in theory, be explored is remarkably vast. As we are faced with near infinite possibilities and limited resources, we require improved search methods to effectively move towards desired optima, e.g. chemical systems exhibiting a target property, or several desired properties. Bayesian optimisation (BO) has recently gained significant traction in chemistry, where within the BO framework, prior knowledge is used to inform and guide the search process to optimise towards desired chemical targets, e.g. optimal reaction conditions to maximise yield, or optimal catalyst exhibiting improved catalytic activity. While powerful, implementing BO algorithms in practice is largely limited to interfacing via various APIs – requiring advanced coding experience and bespoke scripts for each optimisation task. Further, it is challenging to seamlessly link these with electronic lab notebooks via a graphical user interface (GUI). Ultimately, this limits the accessibility of BO algorithms. Here, we present Web-BO, a GUI to support BO for chemical optimisation tasks. We demonstrate its performance using an open source dataset and associated emulator, and link the platform with an existing electronic lab notebook, datalab. By providing a GUI-based BO service, we hope to improve the accessibility of data-driven optimisation tools in chemistry; https://suprashare.rcs.ic.ac.uk/web-bo/.
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来源期刊
CiteScore
7.20
自引率
4.30%
发文量
567
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