核细胞比平衡的随机基因表达模型

Xuesong Bai, Thomas G. Fai
{"title":"核细胞比平衡的随机基因表达模型","authors":"Xuesong Bai, Thomas G. Fai","doi":"arxiv-2407.19066","DOIUrl":null,"url":null,"abstract":"Cell size varies between different cell types, and between different growth\nand osmotic conditions. However, the nuclear-to-cell volume ratio (N/C ratio)\nremains nearly constant. In this paper, we build on existing deterministic\nmodels of N/C ratio homeostasis and develop a simplified gene translation model\nto study the effect of stochasticity on the N/C ratio homeostasis. We solve the\ncorresponding chemical master equation and obtain the mean and variance of the\nN/C ratio. We also use a Taylor expansion approximation to study the effects of\nthe system size on the fluctuations of the N/C ratio. We then combine the\ntranslation model with a cell division model to study the effects of extrinsic\nnoises from cell division on the N/C ratio. Our model demonstrates that the N/C\nratio homeostasis is maintained when the stochasticity in cell growth is taken\ninto account, that the N/C ratio is largely determined by the gene fraction of\nnuclear proteins, and that the fluctuations in the N/C ratio diminish as the\nsystem size increases.","PeriodicalId":501321,"journal":{"name":"arXiv - QuanBio - Cell Behavior","volume":null,"pages":null},"PeriodicalIF":0.0000,"publicationDate":"2024-07-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Stochastic Gene Expression Model of Nuclear-to-Cell Ratio Homeostasis\",\"authors\":\"Xuesong Bai, Thomas G. Fai\",\"doi\":\"arxiv-2407.19066\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"Cell size varies between different cell types, and between different growth\\nand osmotic conditions. However, the nuclear-to-cell volume ratio (N/C ratio)\\nremains nearly constant. In this paper, we build on existing deterministic\\nmodels of N/C ratio homeostasis and develop a simplified gene translation model\\nto study the effect of stochasticity on the N/C ratio homeostasis. We solve the\\ncorresponding chemical master equation and obtain the mean and variance of the\\nN/C ratio. We also use a Taylor expansion approximation to study the effects of\\nthe system size on the fluctuations of the N/C ratio. We then combine the\\ntranslation model with a cell division model to study the effects of extrinsic\\nnoises from cell division on the N/C ratio. Our model demonstrates that the N/C\\nratio homeostasis is maintained when the stochasticity in cell growth is taken\\ninto account, that the N/C ratio is largely determined by the gene fraction of\\nnuclear proteins, and that the fluctuations in the N/C ratio diminish as the\\nsystem size increases.\",\"PeriodicalId\":501321,\"journal\":{\"name\":\"arXiv - QuanBio - Cell Behavior\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2024-07-26\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"arXiv - QuanBio - Cell Behavior\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/arxiv-2407.19066\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"arXiv - QuanBio - Cell Behavior","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/arxiv-2407.19066","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0

摘要

不同类型的细胞以及不同的生长和渗透条件下的细胞大小各不相同。然而,细胞核与细胞体积比(N/C 比)几乎保持不变。本文在现有的核体积比平衡确定性模型的基础上,建立了一个简化的基因翻译模型,以研究随机性对核体积比平衡的影响。我们求解了相应的化学主方程,得到了 N/C 比值的均值和方差。我们还使用泰勒展开近似法研究了系统规模对 N/C 比值波动的影响。然后,我们将翻译模型与细胞分裂模型相结合,研究细胞分裂产生的外在噪声对 N/C 比值的影响。我们的模型证明,当考虑到细胞生长的随机性时,N/C 比值能保持稳定;N/C 比值在很大程度上由核蛋白的基因比例决定;N/C 比值的波动随着系统规模的增大而减小。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Stochastic Gene Expression Model of Nuclear-to-Cell Ratio Homeostasis
Cell size varies between different cell types, and between different growth and osmotic conditions. However, the nuclear-to-cell volume ratio (N/C ratio) remains nearly constant. In this paper, we build on existing deterministic models of N/C ratio homeostasis and develop a simplified gene translation model to study the effect of stochasticity on the N/C ratio homeostasis. We solve the corresponding chemical master equation and obtain the mean and variance of the N/C ratio. We also use a Taylor expansion approximation to study the effects of the system size on the fluctuations of the N/C ratio. We then combine the translation model with a cell division model to study the effects of extrinsic noises from cell division on the N/C ratio. Our model demonstrates that the N/C ratio homeostasis is maintained when the stochasticity in cell growth is taken into account, that the N/C ratio is largely determined by the gene fraction of nuclear proteins, and that the fluctuations in the N/C ratio diminish as the system size increases.
求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
自引率
0.00%
发文量
0
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信