{"title":"核细胞比平衡的随机基因表达模型","authors":"Xuesong Bai, Thomas G. Fai","doi":"arxiv-2407.19066","DOIUrl":null,"url":null,"abstract":"Cell size varies between different cell types, and between different growth\nand osmotic conditions. However, the nuclear-to-cell volume ratio (N/C ratio)\nremains nearly constant. In this paper, we build on existing deterministic\nmodels of N/C ratio homeostasis and develop a simplified gene translation model\nto study the effect of stochasticity on the N/C ratio homeostasis. We solve the\ncorresponding chemical master equation and obtain the mean and variance of the\nN/C ratio. We also use a Taylor expansion approximation to study the effects of\nthe system size on the fluctuations of the N/C ratio. We then combine the\ntranslation model with a cell division model to study the effects of extrinsic\nnoises from cell division on the N/C ratio. Our model demonstrates that the N/C\nratio homeostasis is maintained when the stochasticity in cell growth is taken\ninto account, that the N/C ratio is largely determined by the gene fraction of\nnuclear proteins, and that the fluctuations in the N/C ratio diminish as the\nsystem size increases.","PeriodicalId":501321,"journal":{"name":"arXiv - QuanBio - Cell Behavior","volume":"11 1","pages":""},"PeriodicalIF":0.0000,"publicationDate":"2024-07-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Stochastic Gene Expression Model of Nuclear-to-Cell Ratio Homeostasis\",\"authors\":\"Xuesong Bai, Thomas G. Fai\",\"doi\":\"arxiv-2407.19066\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"Cell size varies between different cell types, and between different growth\\nand osmotic conditions. However, the nuclear-to-cell volume ratio (N/C ratio)\\nremains nearly constant. In this paper, we build on existing deterministic\\nmodels of N/C ratio homeostasis and develop a simplified gene translation model\\nto study the effect of stochasticity on the N/C ratio homeostasis. We solve the\\ncorresponding chemical master equation and obtain the mean and variance of the\\nN/C ratio. We also use a Taylor expansion approximation to study the effects of\\nthe system size on the fluctuations of the N/C ratio. We then combine the\\ntranslation model with a cell division model to study the effects of extrinsic\\nnoises from cell division on the N/C ratio. Our model demonstrates that the N/C\\nratio homeostasis is maintained when the stochasticity in cell growth is taken\\ninto account, that the N/C ratio is largely determined by the gene fraction of\\nnuclear proteins, and that the fluctuations in the N/C ratio diminish as the\\nsystem size increases.\",\"PeriodicalId\":501321,\"journal\":{\"name\":\"arXiv - QuanBio - Cell Behavior\",\"volume\":\"11 1\",\"pages\":\"\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2024-07-26\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"arXiv - QuanBio - Cell Behavior\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/arxiv-2407.19066\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"arXiv - QuanBio - Cell Behavior","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/arxiv-2407.19066","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
Stochastic Gene Expression Model of Nuclear-to-Cell Ratio Homeostasis
Cell size varies between different cell types, and between different growth
and osmotic conditions. However, the nuclear-to-cell volume ratio (N/C ratio)
remains nearly constant. In this paper, we build on existing deterministic
models of N/C ratio homeostasis and develop a simplified gene translation model
to study the effect of stochasticity on the N/C ratio homeostasis. We solve the
corresponding chemical master equation and obtain the mean and variance of the
N/C ratio. We also use a Taylor expansion approximation to study the effects of
the system size on the fluctuations of the N/C ratio. We then combine the
translation model with a cell division model to study the effects of extrinsic
noises from cell division on the N/C ratio. Our model demonstrates that the N/C
ratio homeostasis is maintained when the stochasticity in cell growth is taken
into account, that the N/C ratio is largely determined by the gene fraction of
nuclear proteins, and that the fluctuations in the N/C ratio diminish as the
system size increases.