模拟黄素光谱学和光物理学的电子结构方法:多参量、TD-DFT 和单参量波函数方法的比较。

IF 2.9 2区 化学 Q3 CHEMISTRY, PHYSICAL
The Journal of Physical Chemistry B Pub Date : 2024-08-08 Epub Date: 2024-07-29 DOI:10.1021/acs.jpcb.4c03748
Mohammad Pabel Kabir, Paulami Ghosh, Samer Gozem
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引用次数: 0

摘要

由于黄素和黄素蛋白在光催化、传感和生物技术方面的应用,人们对黄素激发态电子结构和光物理的计算建模越来越感兴趣。然而,关于哪种计算方法适合黄素光物理建模,目前还没有达成共识。我们比较了用时变密度泛函理论(TD-DFT)、运动方程耦合簇(EOM-EE-CCSD)、缩放对旋构型相互作用(SOS-CIS(D))、多构型对密度泛函理论(MC-PDFT)和几种多参量扰动理论(MR-PT2)方法计算的黄素低洼激发态的能量。在第一部分中,我们重点研究了黄素的五种不同氧化还原和质子化态的第一单激发态(S1)的激发能量,目的是为 MR-PT2 计算寻找合适的活性空间。在第二部分,我们构建了两组一维势能面,分别连接 S0 和 S1 平衡几何(S0-S1 路径)以及 S1 (π,π*) 和 S2 (n,π*) 平衡几何(S1-S2 路径)。因此,第一条路径遵循的是黄素的弗朗克-康顿活性模式,而第二条路径映射的是黄素低洼单态和三重态之间的交叉点。我们讨论了沿这些路径的 TD-DFT、EOM-EE-CCSD、SOS-CIS(D)、MC-PDFT 和 MR-PT2 能量曲线的异同。我们发现,(TD-)DFT 方法适用于模拟黄素光谱等应用,但在用于某些几何优化和描述暗(n,π*)态能量时,与其他几种方法不一致。MR-PT2方法有望模拟黄素的低洼激发态,但必须谨慎选择活动空间的轨道和用于状态平均的根数,以避免出现假象。某些特性,如 S1(π,π*)和 T2(n,π*)态之间的系统间交叉几何和能量,可能需要额外的基准测试才能定量确定。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Electronic Structure Methods for Simulating Flavin's Spectroscopy and Photophysics: Comparison of Multi-reference, TD-DFT, and Single-Reference Wave Function Methods.

Electronic Structure Methods for Simulating Flavin's Spectroscopy and Photophysics: Comparison of Multi-reference, TD-DFT, and Single-Reference Wave Function Methods.

The use of flavins and flavoproteins in photocatalytic, sensing, and biotechnological applications has led to a growing interest in computationally modeling the excited-state electronic structure and photophysics of flavin. However, there is limited consensus regarding which computational methods are appropriate for modeling flavin's photophysics. We compare the energies of low-lying excited states of flavin computed with time-dependent density functional theory (TD-DFT), equation-of-motion coupled cluster (EOM-EE-CCSD), scaled opposite-spin configuration interaction [SOS-CIS(D)], multiconfiguration pair-density functional theory (MC-PDFT), and several multireference perturbation theory (MR-PT2) methods. In the first part, we focus on excitation energies of the first singlet excited state (S1) of five different redox and protonation states of flavin, with the goal of finding a suitable active space for MR-PT2 calculations. In the second part, we construct two sets of one-dimensional potential energy surfaces connecting the S0 and S1 equilibrium geometries (S0-S1 path) and the S1 (π,π*) and S2 (n,π*) equilibrium geometries (S1-S2 path). The first path therefore follows a Franck-Condon active mode of flavin while the second path maps crossings points between low-lying singlet and triplet states in flavin. We discuss the similarities and differences in the TD-DFT, EOM-EE-CCSD, SOS-CIS(D), MC-PDFT and MR-PT2 energy profiles along these paths. We find that (TD-)DFT methods are suitable for applications such as simulating the spectra of flavins but are inconsistent with several other methods when used for some geometry optimizations and when describing the energetics of dark (n,π*) states. MR-PT2 methods show promise for the simulation of flavin's low-lying excited states, but the selection of orbitals for the active space and the number of roots used for state averaging must be done carefully to avoid artifacts. Some properties, such as the intersystem crossing geometry and energy between the S1 (π,π*) and T2 (n,π*) states, may require additional benchmarking before they can be determined quantitatively.

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来源期刊
CiteScore
5.80
自引率
9.10%
发文量
965
审稿时长
1.6 months
期刊介绍: An essential criterion for acceptance of research articles in the journal is that they provide new physical insight. Please refer to the New Physical Insights virtual issue on what constitutes new physical insight. Manuscripts that are essentially reporting data or applications of data are, in general, not suitable for publication in JPC B.
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