Kai Yuan, Shuai Zhou, Ning Li, Tianyan Li, Bowen Ding, Danhuai Guo, Yingjin Ma
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引用次数: 0
摘要
轻松有效地利用计算资源对科学计算至关重要。继我们最近的机器学习(ML)辅助调度优化工作[J. Comput. Chem.2023, 44, 1174]之后,我们进一步提出:(1)改进的 ML 模型可更好地预测计算负荷,因此可望进行更精细的负荷均衡计算;(2)编码计算的理念,即梯度编码的整合,以便在分布式计算中引入容错;以及(3)它们与重归一化激子模型和时变密度泛函理论(REM-TDDFT)一起应用于计算激发态。示例基准计算包括 P38 蛋白和具有一个或多个可激发中心的溶剂模型。结果表明,改进的 ML 辅助编码计算能进一步提高负载平衡和集群利用率,这主要归功于针对基态和激发态自动量子化学计算的容错能力。
Fault-tolerant quantum chemical calculations with improved machine-learning models
Easy and effective usage of computational resources is crucial for scientific calculations. Following our recent work of machine-learning (ML) assisted scheduling optimization [J. Comput. Chem.2023, 44, 1174], we further propose (1) the improved ML models for the better predictions of computational loads, and as such, more elaborate load-balancing calculations can be expected; (2) the idea of coded computation, that is, the integration of gradient coding, in order to introduce fault tolerance during the distributed calculations; and (3) their applications together with re-normalized exciton model with time-dependent density functional theory (REM-TDDFT) for calculating the excited states. Illustrated benchmark calculations include P38 protein, and solvent model with one or several excitable centers. The results show that the improved ML-assisted coded calculations can further improve the load-balancing and cluster utilization, owing primarily profit in fault tolerance that aims at the automated quantum chemical calculations for both ground and excited states.
期刊介绍:
This distinguished journal publishes articles concerned with all aspects of computational chemistry: analytical, biological, inorganic, organic, physical, and materials. The Journal of Computational Chemistry presents original research, contemporary developments in theory and methodology, and state-of-the-art applications. Computational areas that are featured in the journal include ab initio and semiempirical quantum mechanics, density functional theory, molecular mechanics, molecular dynamics, statistical mechanics, cheminformatics, biomolecular structure prediction, molecular design, and bioinformatics.