{"title":"活性蛋白质相互作用和化学反应诱导的非平衡膜动力学:综述","authors":"Hiroshi Noguchi","doi":"arxiv-2407.15371","DOIUrl":null,"url":null,"abstract":"Biomembranes wrapping cells and organelles are not only the partitions that\nseparate the insides but also dynamic fields for biological functions\naccompanied by membrane shape changes. In this review, we discuss the\nspatiotemporal patterns and fluctuations of membranes under nonequilibrium\nconditions. In particular, we focus on theoretical analyses and simulations.\nProtein active forces enhance or suppress the membrane fluctuations; the\nmembrane height spectra are deviated from the thermal spectra. Protein binding\nor unbinding to the membrane is activated or inhibited by other proteins and\nchemical reactions, such as ATP hydrolysis. Such active binding processes can\ninduce traveling waves, Turing patterns, and membrane morphological changes.\nThey can be represented by the continuum reaction-diffusion equations and\ndiscrete lattice/particle models with state flips. The effects of structural\nchanges in amphiphilic molecules on the molecular-assembly structures are also\ndiscussed.","PeriodicalId":501040,"journal":{"name":"arXiv - PHYS - Biological Physics","volume":null,"pages":null},"PeriodicalIF":0.0000,"publicationDate":"2024-07-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Nonequilibrium Membrane Dynamics Induced by Active Protein Interactions and Chemical Reactions: A Review\",\"authors\":\"Hiroshi Noguchi\",\"doi\":\"arxiv-2407.15371\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"Biomembranes wrapping cells and organelles are not only the partitions that\\nseparate the insides but also dynamic fields for biological functions\\naccompanied by membrane shape changes. In this review, we discuss the\\nspatiotemporal patterns and fluctuations of membranes under nonequilibrium\\nconditions. In particular, we focus on theoretical analyses and simulations.\\nProtein active forces enhance or suppress the membrane fluctuations; the\\nmembrane height spectra are deviated from the thermal spectra. Protein binding\\nor unbinding to the membrane is activated or inhibited by other proteins and\\nchemical reactions, such as ATP hydrolysis. Such active binding processes can\\ninduce traveling waves, Turing patterns, and membrane morphological changes.\\nThey can be represented by the continuum reaction-diffusion equations and\\ndiscrete lattice/particle models with state flips. The effects of structural\\nchanges in amphiphilic molecules on the molecular-assembly structures are also\\ndiscussed.\",\"PeriodicalId\":501040,\"journal\":{\"name\":\"arXiv - PHYS - Biological Physics\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2024-07-22\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"arXiv - PHYS - Biological Physics\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/arxiv-2407.15371\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"arXiv - PHYS - Biological Physics","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/arxiv-2407.15371","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0
摘要
包裹细胞和细胞器的生物膜不仅是分隔内部的隔板,也是伴随膜形状变化的生物功能动态场。在这篇综述中,我们将讨论非平衡条件下膜的时空模式和波动。蛋白质活性力增强或抑制膜波动;膜高度谱偏离热谱。蛋白质与膜的结合或解除结合会被其他蛋白质和化学反应(如 ATP 水解)激活或抑制。这种活跃的结合过程可引发行波、图灵模式和膜形态变化,可用连续反应-扩散方程和具有状态翻转的离散晶格/粒子模型来表示。此外,还讨论了两亲分子结构变化对分子组装结构的影响。
Nonequilibrium Membrane Dynamics Induced by Active Protein Interactions and Chemical Reactions: A Review
Biomembranes wrapping cells and organelles are not only the partitions that
separate the insides but also dynamic fields for biological functions
accompanied by membrane shape changes. In this review, we discuss the
spatiotemporal patterns and fluctuations of membranes under nonequilibrium
conditions. In particular, we focus on theoretical analyses and simulations.
Protein active forces enhance or suppress the membrane fluctuations; the
membrane height spectra are deviated from the thermal spectra. Protein binding
or unbinding to the membrane is activated or inhibited by other proteins and
chemical reactions, such as ATP hydrolysis. Such active binding processes can
induce traveling waves, Turing patterns, and membrane morphological changes.
They can be represented by the continuum reaction-diffusion equations and
discrete lattice/particle models with state flips. The effects of structural
changes in amphiphilic molecules on the molecular-assembly structures are also
discussed.