Anna Gavrilova, Nickolay Korabel, Victoria J. Allan, Sergei Fedotov
{"title":"致密核心囊泡在 elegans 中超扩散运动的异质模型","authors":"Anna Gavrilova, Nickolay Korabel, Victoria J. Allan, Sergei Fedotov","doi":"arxiv-2407.18237","DOIUrl":null,"url":null,"abstract":"Transport of dense core vesicles (DCVs) in neurons is crucial for\ndistributing molecules like neuropeptides and growth factors. We studied the\nexperimental trajectories of dynein-driven directed movement of DCVs in the ALA\nneuron C. elegans over a duration of up to 6 seconds. We analysed the DCV\nmovement in three strains of C. elegans: 1) with normal kinesin-1 function, 2)\nwith reduced function in kinesin light chain 2 (KLC-2), and 3) a null mutation\nin kinesin light chain 1 (KLC-1). We find that DCVs move superdiffusively with\ndisplacement variance $var(x) \\sim t^2$ in all three strains with low reversal\nrates and frequent immobilization of DCVs. The distribution of DCV\ndisplacements fits a beta-binomial distribution with the mean and the variance\nfollowing linear and quadratic growth patterns, respectively. We propose a\nsimple heterogeneous random walk model to explain the observed superdiffusive\nretrograde transport behaviour of DCV movement. This model involves a random\nprobability with the beta density for a DCV to resume its movement or remain in\nthe same position.","PeriodicalId":501170,"journal":{"name":"arXiv - QuanBio - Subcellular Processes","volume":"37 1","pages":""},"PeriodicalIF":0.0000,"publicationDate":"2024-07-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Heterogeneous model for superdiffusive movement of dense-core vesicles in C. elegans\",\"authors\":\"Anna Gavrilova, Nickolay Korabel, Victoria J. Allan, Sergei Fedotov\",\"doi\":\"arxiv-2407.18237\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"Transport of dense core vesicles (DCVs) in neurons is crucial for\\ndistributing molecules like neuropeptides and growth factors. We studied the\\nexperimental trajectories of dynein-driven directed movement of DCVs in the ALA\\nneuron C. elegans over a duration of up to 6 seconds. We analysed the DCV\\nmovement in three strains of C. elegans: 1) with normal kinesin-1 function, 2)\\nwith reduced function in kinesin light chain 2 (KLC-2), and 3) a null mutation\\nin kinesin light chain 1 (KLC-1). We find that DCVs move superdiffusively with\\ndisplacement variance $var(x) \\\\sim t^2$ in all three strains with low reversal\\nrates and frequent immobilization of DCVs. The distribution of DCV\\ndisplacements fits a beta-binomial distribution with the mean and the variance\\nfollowing linear and quadratic growth patterns, respectively. We propose a\\nsimple heterogeneous random walk model to explain the observed superdiffusive\\nretrograde transport behaviour of DCV movement. This model involves a random\\nprobability with the beta density for a DCV to resume its movement or remain in\\nthe same position.\",\"PeriodicalId\":501170,\"journal\":{\"name\":\"arXiv - QuanBio - Subcellular Processes\",\"volume\":\"37 1\",\"pages\":\"\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2024-07-25\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"arXiv - QuanBio - Subcellular Processes\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/arxiv-2407.18237\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"arXiv - QuanBio - Subcellular Processes","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/arxiv-2407.18237","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
Heterogeneous model for superdiffusive movement of dense-core vesicles in C. elegans
Transport of dense core vesicles (DCVs) in neurons is crucial for
distributing molecules like neuropeptides and growth factors. We studied the
experimental trajectories of dynein-driven directed movement of DCVs in the ALA
neuron C. elegans over a duration of up to 6 seconds. We analysed the DCV
movement in three strains of C. elegans: 1) with normal kinesin-1 function, 2)
with reduced function in kinesin light chain 2 (KLC-2), and 3) a null mutation
in kinesin light chain 1 (KLC-1). We find that DCVs move superdiffusively with
displacement variance $var(x) \sim t^2$ in all three strains with low reversal
rates and frequent immobilization of DCVs. The distribution of DCV
displacements fits a beta-binomial distribution with the mean and the variance
following linear and quadratic growth patterns, respectively. We propose a
simple heterogeneous random walk model to explain the observed superdiffusive
retrograde transport behaviour of DCV movement. This model involves a random
probability with the beta density for a DCV to resume its movement or remain in
the same position.