{"title":"阿尔茨海默病进展的预测模型:在时间序列预测中整合时间性临床因素和结果","authors":"K.H. Aqil , Prashanth Dumpuri , Keerthi Ram , Mohanasankar Sivaprakasam","doi":"10.1016/j.ibmed.2024.100159","DOIUrl":null,"url":null,"abstract":"<div><p>Alzheimer's disease is a complex neurodegenerative disorder that profoundly impacts millions of individuals worldwide, presenting significant challenges in both diagnosis and treatment. Recent advances in deep learning-based methods have shown promising potential for predicting disease progression using multimodal data. However, the majority of studies in this domain have predominantly focused on cross-sectional data, neglecting the crucial temporal dimension of the disease's progression. In this study, we propose a novel approach to predict the progression of Alzheimer's disease by leveraging a multimodal time-series forecasting system based on graph representation learning. Our approach incorporates a Temporal Graph Network encoder, employing k-nearest neighbors and Cumulative Bayesian Ridge with high correlation imputation to generate graph node embeddings at each time step. Furthermore, we employ an Encoder-Decoder architecture, where a Graph Attention Network translates a dynamic graph into node embeddings, and a decoder estimates future edge probabilities. When utilizing all available patient features in the ADNI dataset, our proposed method achieved an Area Under the Curve (AUC) of 0.8090 for dynamic edge prediction. Furthermore, for neuroimaging data, the AUC improved significantly to 0.8807.</p></div>","PeriodicalId":73399,"journal":{"name":"Intelligence-based medicine","volume":"10 ","pages":"Article 100159"},"PeriodicalIF":0.0000,"publicationDate":"2024-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2666521224000267/pdfft?md5=966a05e54125ad7b71aab383d1ad9557&pid=1-s2.0-S2666521224000267-main.pdf","citationCount":"0","resultStr":"{\"title\":\"Predictive modeling of Alzheimer's disease progression: Integrating temporal clinical factors and outcomes in time series forecasting\",\"authors\":\"K.H. Aqil , Prashanth Dumpuri , Keerthi Ram , Mohanasankar Sivaprakasam\",\"doi\":\"10.1016/j.ibmed.2024.100159\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><p>Alzheimer's disease is a complex neurodegenerative disorder that profoundly impacts millions of individuals worldwide, presenting significant challenges in both diagnosis and treatment. Recent advances in deep learning-based methods have shown promising potential for predicting disease progression using multimodal data. However, the majority of studies in this domain have predominantly focused on cross-sectional data, neglecting the crucial temporal dimension of the disease's progression. In this study, we propose a novel approach to predict the progression of Alzheimer's disease by leveraging a multimodal time-series forecasting system based on graph representation learning. Our approach incorporates a Temporal Graph Network encoder, employing k-nearest neighbors and Cumulative Bayesian Ridge with high correlation imputation to generate graph node embeddings at each time step. Furthermore, we employ an Encoder-Decoder architecture, where a Graph Attention Network translates a dynamic graph into node embeddings, and a decoder estimates future edge probabilities. When utilizing all available patient features in the ADNI dataset, our proposed method achieved an Area Under the Curve (AUC) of 0.8090 for dynamic edge prediction. Furthermore, for neuroimaging data, the AUC improved significantly to 0.8807.</p></div>\",\"PeriodicalId\":73399,\"journal\":{\"name\":\"Intelligence-based medicine\",\"volume\":\"10 \",\"pages\":\"Article 100159\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2024-01-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.sciencedirect.com/science/article/pii/S2666521224000267/pdfft?md5=966a05e54125ad7b71aab383d1ad9557&pid=1-s2.0-S2666521224000267-main.pdf\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Intelligence-based medicine\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S2666521224000267\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Intelligence-based medicine","FirstCategoryId":"1085","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S2666521224000267","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0
摘要
阿尔茨海默病是一种复杂的神经退行性疾病,严重影响着全球数百万人,给诊断和治疗带来了巨大挑战。基于深度学习的方法的最新进展表明,利用多模态数据预测疾病进展具有广阔的前景。然而,该领域的大多数研究主要关注横截面数据,忽略了疾病进展的关键时间维度。在本研究中,我们提出了一种新方法,利用基于图表示学习的多模态时间序列预测系统来预测阿尔茨海默病的进展。我们的方法结合了时序图网络编码器,采用 k 近邻和累积贝叶斯岭以及高相关性估算,在每个时间步生成图节点嵌入。此外,我们还采用了编码器-解码器架构,其中图形注意网络将动态图转化为节点嵌入,而解码器则估算未来的边缘概率。当利用 ADNI 数据集中所有可用的患者特征时,我们提出的方法在动态边缘预测方面的曲线下面积 (AUC) 达到了 0.8090。此外,对于神经影像数据,AUC 显著提高到 0.8807。
Predictive modeling of Alzheimer's disease progression: Integrating temporal clinical factors and outcomes in time series forecasting
Alzheimer's disease is a complex neurodegenerative disorder that profoundly impacts millions of individuals worldwide, presenting significant challenges in both diagnosis and treatment. Recent advances in deep learning-based methods have shown promising potential for predicting disease progression using multimodal data. However, the majority of studies in this domain have predominantly focused on cross-sectional data, neglecting the crucial temporal dimension of the disease's progression. In this study, we propose a novel approach to predict the progression of Alzheimer's disease by leveraging a multimodal time-series forecasting system based on graph representation learning. Our approach incorporates a Temporal Graph Network encoder, employing k-nearest neighbors and Cumulative Bayesian Ridge with high correlation imputation to generate graph node embeddings at each time step. Furthermore, we employ an Encoder-Decoder architecture, where a Graph Attention Network translates a dynamic graph into node embeddings, and a decoder estimates future edge probabilities. When utilizing all available patient features in the ADNI dataset, our proposed method achieved an Area Under the Curve (AUC) of 0.8090 for dynamic edge prediction. Furthermore, for neuroimaging data, the AUC improved significantly to 0.8807.