深度学习算法与高斯模糊数据预处理在环状 RNA 分类与检测中的应用

Evint Leovonzko, Callixta F. Cahyaningrum, Rachmania Ulwani
{"title":"深度学习算法与高斯模糊数据预处理在环状 RNA 分类与检测中的应用","authors":"Evint Leovonzko, Callixta F. Cahyaningrum, Rachmania Ulwani","doi":"10.26685/urncst.601","DOIUrl":null,"url":null,"abstract":"Introduction: Circular RNAs (circRNAs) are increasingly recognized as key regulators of gene expression due to their unique closed-loop structure and involvement in various cellular processes. This study investigates the utilization of machine learning algorithms in predicting circRNA-disease associations. Methods: This study proposes a novel deep learning approach leveraging artificial neural networks (ANN) for circRNA classification. The methodology involves data collection from circRNA databases, k-mers counting for feature extraction, Gaussian blur implementation for data smoothing, and ANN-based model training. Results: Evaluation of the trained models based on precision, recall, and f1-score metrics shows an overall accuracy of 0.7511, with an average precision score of 0.7982, recall of 0.7511, and f1-score of 0.7637. Discussion: The results indicate that our ANN-based algorithm effectively detects and classifies circRNA datasets with considerable accuracy. Compared to the algorithm from past research, our algorithm is also shown to have less computational power. Conclusion: Comparative analysis demonstrates improved performance compared to previous algorithms, suggesting its potential for widespread implementation due to reduced computational requirements and simpler implementation.","PeriodicalId":245521,"journal":{"name":"Undergraduate Research in Natural and Clinical Science and Technology (URNCST) Journal","volume":" 8","pages":""},"PeriodicalIF":0.0000,"publicationDate":"2024-07-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"The Implementation of Deep Learning Algorithm with Gaussian Blur Data Preprocessing in Circular RNA Classification and Detection\",\"authors\":\"Evint Leovonzko, Callixta F. Cahyaningrum, Rachmania Ulwani\",\"doi\":\"10.26685/urncst.601\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"Introduction: Circular RNAs (circRNAs) are increasingly recognized as key regulators of gene expression due to their unique closed-loop structure and involvement in various cellular processes. This study investigates the utilization of machine learning algorithms in predicting circRNA-disease associations. Methods: This study proposes a novel deep learning approach leveraging artificial neural networks (ANN) for circRNA classification. The methodology involves data collection from circRNA databases, k-mers counting for feature extraction, Gaussian blur implementation for data smoothing, and ANN-based model training. Results: Evaluation of the trained models based on precision, recall, and f1-score metrics shows an overall accuracy of 0.7511, with an average precision score of 0.7982, recall of 0.7511, and f1-score of 0.7637. Discussion: The results indicate that our ANN-based algorithm effectively detects and classifies circRNA datasets with considerable accuracy. Compared to the algorithm from past research, our algorithm is also shown to have less computational power. Conclusion: Comparative analysis demonstrates improved performance compared to previous algorithms, suggesting its potential for widespread implementation due to reduced computational requirements and simpler implementation.\",\"PeriodicalId\":245521,\"journal\":{\"name\":\"Undergraduate Research in Natural and Clinical Science and Technology (URNCST) Journal\",\"volume\":\" 8\",\"pages\":\"\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2024-07-04\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Undergraduate Research in Natural and Clinical Science and Technology (URNCST) Journal\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.26685/urncst.601\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Undergraduate Research in Natural and Clinical Science and Technology (URNCST) Journal","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.26685/urncst.601","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0

摘要

导言:环状 RNA(circRNA)因其独特的闭环结构和参与各种细胞过程,越来越被认为是基因表达的关键调控因子。本研究探讨了如何利用机器学习算法预测 circRNA 与疾病的关联。方法:本研究提出了一种利用人工神经网络(ANN)进行 circRNA 分类的新型深度学习方法。该方法涉及从 circRNA 数据库中收集数据、用于特征提取的 k-mers 计数、用于数据平滑的高斯模糊实现以及基于 ANN 的模型训练。结果:根据精确度、召回率和 f1 分数指标对训练的模型进行评估,结果显示总体精确度为 0.7511,平均精确度为 0.7982,召回率为 0.7511,f1 分数为 0.7637。讨论结果表明,我们基于 ANN 的算法能有效地对 circRNA 数据集进行检测和分类,且准确率相当高。与过去研究的算法相比,我们的算法的计算能力也更低。结论对比分析表明,与以前的算法相比,我们的算法性能有所提高,而且由于计算要求降低、实施更简单,因此有望得到广泛应用。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
The Implementation of Deep Learning Algorithm with Gaussian Blur Data Preprocessing in Circular RNA Classification and Detection
Introduction: Circular RNAs (circRNAs) are increasingly recognized as key regulators of gene expression due to their unique closed-loop structure and involvement in various cellular processes. This study investigates the utilization of machine learning algorithms in predicting circRNA-disease associations. Methods: This study proposes a novel deep learning approach leveraging artificial neural networks (ANN) for circRNA classification. The methodology involves data collection from circRNA databases, k-mers counting for feature extraction, Gaussian blur implementation for data smoothing, and ANN-based model training. Results: Evaluation of the trained models based on precision, recall, and f1-score metrics shows an overall accuracy of 0.7511, with an average precision score of 0.7982, recall of 0.7511, and f1-score of 0.7637. Discussion: The results indicate that our ANN-based algorithm effectively detects and classifies circRNA datasets with considerable accuracy. Compared to the algorithm from past research, our algorithm is also shown to have less computational power. Conclusion: Comparative analysis demonstrates improved performance compared to previous algorithms, suggesting its potential for widespread implementation due to reduced computational requirements and simpler implementation.
求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
CiteScore
0.10
自引率
0.00%
发文量
0
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信