蚂蚁Odontoponera transversa和木匠蚁Camponotus friedae(膜翅目:蚁科)的基因组组装草案。

IF 1.9 Q3 GENETICS & HEREDITY
Jinlin Liu, Zijun Xiong, Youliang Pan, Jie Zhao, Wei Dai, Qunfei Guo, Weiwei Liu, Qiye Li
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引用次数: 0

摘要

目的:蚂蚁是大多数陆地生态系统中占生态主导地位的昆虫,迄今已记录了约 340 个属的 14,000 多个现存物种。然而,大多数物种的基因组资源仍然匮乏,尤其是东亚或东南亚地区特有的物种,这限制了对这一进化成功的动物门类的系统发育、物种演化和适应性的研究。在此,我们对两种在中国自然分布的蚂蚁--Odontoponera transversa和Camponotus friedae的基因组进行了组装和注释,以促进未来对蚂蚁进化的研究:我们分别获得了O. transversa和C. friedae的16 Gb和51 Gb PacBio HiFi数据,并将其组装成O. transversa的339 Mb和C. friedae的233 Mb基因组草案。通过多种指标进行的基因组评估表明,这两个基因组的组装具有良好的完整性和较高的准确性。通过RNA-seq数据辅助基因注释,两个基因组中的蛋白编码基因数量相当(O. transversa为10,892个,C. friedae为11,296个),而重复注释显示这两种蚂蚁的重复含量存在显著差异(O. transversa为149.4 Mb,C. friedae为49.7 Mb)。此外,还组装并注释了这两个物种的完整线粒体基因组。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Draft genome assemblies of the ponerine ant Odontoponera transversa and the carpenter ant Camponotus friedae (Hymenoptera: Formicidae).

Objectives: Ants are ecologically dominant insects in most terrestrial ecosystems, with more than 14,000 extant species in about 340 genera recorded to date. However, genomic resources are still scarce for most species, especially for species endemic in East or Southeast Asia, limiting the study of phylogeny, speciation and adaptation of this evolutionarily successful animal lineage. Here, we assemble and annotate the genomes of Odontoponera transversa and Camponotus friedae, two ant species with a natural distribution in China, to facilitate future study of ant evolution.

Data description: We obtained a total of 16 Gb and 51 Gb PacBio HiFi data for O. transversa and C. friedae, respectively, which were assembled into the draft genomes of 339 Mb for O. transversa and 233 Mb for C. friedae. Genome assessments by multiple metrics showed good completeness and high accuracy of the two assemblies. Gene annotations assisted by RNA-seq data yielded a comparable number of protein-coding genes in the two genomes (10,892 for O. transversa and 11,296 for C. friedae), while repeat annotations revealed a remarkable difference of repeat content between these two ant species (149.4 Mb for O. transversa versus 49.7 Mb for C. friedae). Besides, complete mitochondrial genomes for the two species were assembled and annotated.

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