{"title":"HOFE:交互式法医昆虫学数据库。","authors":"Mandie Liu, Yihong Qu, Yifei Luo, Binta J J Jallow, Yuting Ma, Afito Luciano, Jingjing Huang, Jifeng Cai, Fanming Meng","doi":"10.1093/database/baae058","DOIUrl":null,"url":null,"abstract":"<p><p>The significance of entomological evidence in inferring the time, location and cause of death has been demonstrated both theoretically and practically. With the advancement of sequencing technologies, reports have emerged on necrophagous insects' nuclear genomes, transcriptomes, proteomes and mitochondrial genomes. However, within the field of forensic entomology, there is currently no available database that can integrate, store and share the resources of necrophagous insects. The absence of a database poses an inconvenience to the application of entomological evidence in judicial practice and hampers the development of the forensic entomology discipline. Given this, we have developed the Home Of Forensic Entomology database, encompassing 10 core functional modules: Home, Browse, Mitochondria, Proteome, JBrowse, Search, BLAST, Tools, Case base and Maps. Notably, the 'Tools' module enables multiple sequence alignment analysis (Muscle), homologous protein prediction (Genewise), primer design (Primer), large-scale genomic analysis (Lastz), Gene Ontology and Kyoto Encyclopedia of Genes and Genomes enrichment analysis, as well as expression profiling (PCA Analysis, Hcluster and Correlation Heatmap). In addition, the present database also works as an interactive platform for researchers by sharing forensic entomological case reports and uploading data and material. This database provides potential visitors with a comprehensive function for multi-omics data analysis, offers substantial references to researchers and criminal scene investigators and facilitates the utilization of entomological evidence in court. Database URL: http://ihofe.com/.</p>","PeriodicalId":3,"journal":{"name":"ACS Applied Electronic Materials","volume":null,"pages":null},"PeriodicalIF":4.3000,"publicationDate":"2024-07-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11245407/pdf/","citationCount":"0","resultStr":"{\"title\":\"HOFE: an interactive forensic entomological database.\",\"authors\":\"Mandie Liu, Yihong Qu, Yifei Luo, Binta J J Jallow, Yuting Ma, Afito Luciano, Jingjing Huang, Jifeng Cai, Fanming Meng\",\"doi\":\"10.1093/database/baae058\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>The significance of entomological evidence in inferring the time, location and cause of death has been demonstrated both theoretically and practically. With the advancement of sequencing technologies, reports have emerged on necrophagous insects' nuclear genomes, transcriptomes, proteomes and mitochondrial genomes. However, within the field of forensic entomology, there is currently no available database that can integrate, store and share the resources of necrophagous insects. The absence of a database poses an inconvenience to the application of entomological evidence in judicial practice and hampers the development of the forensic entomology discipline. Given this, we have developed the Home Of Forensic Entomology database, encompassing 10 core functional modules: Home, Browse, Mitochondria, Proteome, JBrowse, Search, BLAST, Tools, Case base and Maps. Notably, the 'Tools' module enables multiple sequence alignment analysis (Muscle), homologous protein prediction (Genewise), primer design (Primer), large-scale genomic analysis (Lastz), Gene Ontology and Kyoto Encyclopedia of Genes and Genomes enrichment analysis, as well as expression profiling (PCA Analysis, Hcluster and Correlation Heatmap). In addition, the present database also works as an interactive platform for researchers by sharing forensic entomological case reports and uploading data and material. This database provides potential visitors with a comprehensive function for multi-omics data analysis, offers substantial references to researchers and criminal scene investigators and facilitates the utilization of entomological evidence in court. 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引用次数: 0
摘要
昆虫学证据在推断死亡时间、地点和原因方面的重要性已在理论和实践中得到证明。随着测序技术的进步,有关食尸昆虫核基因组、转录组、蛋白质组和线粒体基因组的报告不断涌现。然而,在法医昆虫学领域,目前还没有一个可以整合、存储和共享食尸昆虫资源的数据库。数据库的缺失给昆虫学证据在司法实践中的应用带来了不便,也阻碍了法医昆虫学学科的发展。有鉴于此,我们开发了包含 10 个核心功能模块的 Home Of Forensic Entomology 数据库:主页、浏览、线粒体、蛋白质组、JBrowse、搜索、BLAST、工具、案例库和地图。值得一提的是,"工具 "模块可进行多序列比对分析(Muscle)、同源蛋白预测(Genewise)、引物设计(Primer)、大规模基因组分析(Lastz)、基因本体和京都基因组百科全书富集分析,以及表达谱分析(PCA 分析、Hcluster 和相关热图)。此外,本数据库还可作为研究人员的互动平台,分享法医昆虫学案例报告并上传数据和材料。该数据库为潜在访问者提供了多组学数据分析的综合功能,为研究人员和犯罪现场调查人员提供了大量参考资料,并有助于在法庭上利用昆虫学证据。数据库网址:http://ihofe.com/。
HOFE: an interactive forensic entomological database.
The significance of entomological evidence in inferring the time, location and cause of death has been demonstrated both theoretically and practically. With the advancement of sequencing technologies, reports have emerged on necrophagous insects' nuclear genomes, transcriptomes, proteomes and mitochondrial genomes. However, within the field of forensic entomology, there is currently no available database that can integrate, store and share the resources of necrophagous insects. The absence of a database poses an inconvenience to the application of entomological evidence in judicial practice and hampers the development of the forensic entomology discipline. Given this, we have developed the Home Of Forensic Entomology database, encompassing 10 core functional modules: Home, Browse, Mitochondria, Proteome, JBrowse, Search, BLAST, Tools, Case base and Maps. Notably, the 'Tools' module enables multiple sequence alignment analysis (Muscle), homologous protein prediction (Genewise), primer design (Primer), large-scale genomic analysis (Lastz), Gene Ontology and Kyoto Encyclopedia of Genes and Genomes enrichment analysis, as well as expression profiling (PCA Analysis, Hcluster and Correlation Heatmap). In addition, the present database also works as an interactive platform for researchers by sharing forensic entomological case reports and uploading data and material. This database provides potential visitors with a comprehensive function for multi-omics data analysis, offers substantial references to researchers and criminal scene investigators and facilitates the utilization of entomological evidence in court. Database URL: http://ihofe.com/.