Res-MulFra:用于脑肿瘤分割的多层次和多尺度框架

IF 3 4区 计算机科学 Q2 ENGINEERING, ELECTRICAL & ELECTRONIC
Dan Huang, Luyi Qiu, Zifeng Liu, Yi Ding, Mingsheng Cao
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引用次数: 0

摘要

在临床诊断和手术规划中,从磁共振图像(MRI)中提取脑肿瘤非常重要。然而,考虑到脑肿瘤数据集的高变异性和不平衡性,如何设计一种深度神经网络来准确分割脑肿瘤仍然是研究人员面临的挑战。此外,随着卷积层数的增加,深度特征图无法提供细粒度的空间信息,而这些特征信息对于从核磁共振成像中分割脑肿瘤非常有用。为了解决这一问题,本文提出了一种残差多层次多尺度框架(Res-MulFra)的脑肿瘤分割方法。在所提出的框架中,多层次是通过堆叠所提出的基于 RMFM 的分割网络(RMFMSegNet)来实现的,主要用于利用先验知识来获得更好的脑肿瘤分割性能。多尺度由所提出的 RMFMSegNet 实现,它包括并行多分支结构和串行多分支结构,主要用于获取多尺度特征信息。此外,还从各种感受野中提出了残差多尺度特征融合模块(RMFM),以有效结合上下文特征信息。此外,为了获得更好的脑肿瘤分割性能,还采用了通道注意模块。通过在 BraTS 数据集上评估所设计的框架,并将其与其他先进方法进行比较,大量实验结果验证了 Res-MulFra 的有效性。在 BraTS2015 测试数据集上,所提方法的完整区域 Dice 值为 0.85,核心区域 Dice 值为 0.72,增强区域 Dice 值为 0.62。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Res-MulFra: Multilevel and Multiscale Framework for Brain Tumor Segmentation

In clinical diagnosis and surgical planning, extracting brain tumors from magnetic resonance images (MRI) is very important. Nevertheless, considering the high variability and imbalance of the brain tumor datasets, the way of designing a deep neural network for accurately segmenting the brain tumor still challenges the researchers. Moreover, as the number of convolutional layers increases, the deep feature maps cannot provide fine-grained spatial information, and this feature information is useful for segmenting brain tumors from the MRI. Aiming to solve this problem, a brain tumor segmenting method of residual multilevel and multiscale framework (Res-MulFra) is proposed in this article. In the proposed framework, the multilevel is realized by stacking the proposed RMFM-based segmentation network (RMFMSegNet), which is mainly used to leverage the prior knowledge to gain a better brain tumor segmentation performance. The multiscale is implemented by the proposed RMFMSegNet, which includes both the parallel multibranch structure and the serial multibranch structure, and is mainly designed for obtaining the multiscale feature information. Moreover, from various receptive fields, a residual multiscale feature fusion module (RMFM) is also proposed to effectively combine the contextual feature information. Furthermore, in order to gain a better brain tumor segmentation performance, the channel attention module is also adopted. Through assessing the devised framework on the BraTS dataset and comparing it with other advanced methods, the effectiveness of the Res-MulFra is verified by the extensive experimental results. For the BraTS2015 testing dataset, the Dice value of the proposed method is 0.85 for the complete area, 0.72 for the core area, and 0.62 for the enhanced area.

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来源期刊
International Journal of Imaging Systems and Technology
International Journal of Imaging Systems and Technology 工程技术-成像科学与照相技术
CiteScore
6.90
自引率
6.10%
发文量
138
审稿时长
3 months
期刊介绍: The International Journal of Imaging Systems and Technology (IMA) is a forum for the exchange of ideas and results relevant to imaging systems, including imaging physics and informatics. The journal covers all imaging modalities in humans and animals. IMA accepts technically sound and scientifically rigorous research in the interdisciplinary field of imaging, including relevant algorithmic research and hardware and software development, and their applications relevant to medical research. The journal provides a platform to publish original research in structural and functional imaging. The journal is also open to imaging studies of the human body and on animals that describe novel diagnostic imaging and analyses methods. Technical, theoretical, and clinical research in both normal and clinical populations is encouraged. Submissions describing methods, software, databases, replication studies as well as negative results are also considered. The scope of the journal includes, but is not limited to, the following in the context of biomedical research: Imaging and neuro-imaging modalities: structural MRI, functional MRI, PET, SPECT, CT, ultrasound, EEG, MEG, NIRS etc.; Neuromodulation and brain stimulation techniques such as TMS and tDCS; Software and hardware for imaging, especially related to human and animal health; Image segmentation in normal and clinical populations; Pattern analysis and classification using machine learning techniques; Computational modeling and analysis; Brain connectivity and connectomics; Systems-level characterization of brain function; Neural networks and neurorobotics; Computer vision, based on human/animal physiology; Brain-computer interface (BCI) technology; Big data, databasing and data mining.
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