冠状动脉疾病中内质网应激相关生物标记物的鉴定

IF 3.4 4区 医学 Q2 CARDIAC & CARDIOVASCULAR SYSTEMS
Yuanyuan Lin, Lin Ni, Luqun Yang, Hao Li, Zelin Chen, Yuping Gao, Kaiyi Zhu, Yanni Jia, Zhifang Wu, Sijin Li
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引用次数: 0

摘要

冠状动脉疾病(CAD)是由冠状动脉血管中的动脉粥样硬化病变引起的。内质网应激(ERS)作用于心血管疾病,但其在 CAD 中的作用尚不明确。研究共发现了 13 个在 CAD 中差异表达的 ERS 相关基因(DEERSRGs)。功能富集分析表明,DEERSRGs 主要富集于内质网(ER)相关通路。然后,通过最小绝对收缩和选择算子(LASSO)鉴定了 8 个基因(RCN2、HRC、DERL2、RNF183、CRH、TMED2、PPP1R15A 和 IL1A)作为 CAD 中 ERS 相关的生物标记物。接受者操作特征(ROC)分析表明,基于生物标志物构建的 LASSO logistic 模型具有更好的诊断效果,这一点在 ANN 和 GSE23561 数据集上得到了证实。此外,ROC 结果显示,8 个生物标志物中有 7 个具有更好的诊断效果。提名图模型具有良好的预测能力,生物标志物大多富集在与 CAD 相关的通路中。生物标志物与10种免疫细胞有明显相关性,其中RCN2、DERL2、TMED2和RNF183与大多数趋化因子呈负相关。有 8 个生物标记物与免疫抑制剂和免疫刺激剂都有明显的相关性。此外,有 8 个生物标记物在 CAD 和对照样本中存在明显差异,CRH 和 HRC 在 CAD 中上调。定量反转录聚合酶链反应(qRT-PCR)显示,RCN2、HRC、DERL2、CRH和IL1A与生物信息学分析结果一致。RCN2、HRC、DERL2、RNF183、CRH、TMED2、PPP1R15A和IL1A被确定为CAD的生物标志物。生物标志物的功能富集分析和免疫测定为治疗 CAD 提供了新思路。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Identification of Endoplasmic Reticulum Stress-Related Biomarkers in Coronary Artery Disease

Identification of Endoplasmic Reticulum Stress-Related Biomarkers in Coronary Artery Disease

Coronary artery disease (CAD) is caused by atherosclerotic lesions in the coronary vessels. Endoplasmic reticulum stress (ERS) acts in cardiovascular disease, and its role in CAD is not clear. A total of 13 differentially expressed ERS-related genes (DEERSRGs) in CAD were identified. Functional enrichment analysis demonstrated the DEERSRGs were mainly enriched in endoplasmic reticulum (ER)-related pathways. Then, eight genes (RCN2, HRC, DERL2, RNF183, CRH, TMED2, PPP1R15A, and IL1A) were authenticated as ERS-related biomarkers in CAD by least absolute shrinkage and selection operator (LASSO). The receiver operating characteristic (ROC) analysis showed that the LASSO logistic model constructed based on biomarkers had a better diagnostic effect, which was confirmed by the ANN and GSE23561 datasets. Also, ROC results showed that seven of the eight biomarkers had better diagnostic effects. The nomogram model had good predictive power, and biomarkers were mostly enriched in pathways associated with CAD. The biomarkers were significantly associated with 10 immune cells, and RCN2, DERL2, TMED2, and RNF183 were negatively correlated with most chemokines. Eight biomarkers had significant correlations with both immunoinhibitors and immunostimulators. In addition, eight biomarkers were significantly different in both CAD and control samples, CRH and HRC were upregulated in CAD. The quantitative reverse transcription-polymerase chain reaction (qRT-PCR) showed that RCN2, HRC, DERL2, CRH, and IL1A were consistent with the bioinformatics analysis. RCN2, HRC, DERL2, RNF183, CRH, TMED2, PPP1R15A, and IL1A were identified as biomarkers of CAD. Functional enrichment analysis and immunoassays for biomarkers provide new ideas for the treatment of CAD.

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来源期刊
Cardiovascular Therapeutics
Cardiovascular Therapeutics 医学-心血管系统
CiteScore
5.60
自引率
0.00%
发文量
55
审稿时长
6 months
期刊介绍: Cardiovascular Therapeutics (formerly Cardiovascular Drug Reviews) is a peer-reviewed, Open Access journal that publishes original research and review articles focusing on cardiovascular and clinical pharmacology, as well as clinical trials of new cardiovascular therapies. Articles on translational research, pharmacogenomics and personalized medicine, device, gene and cell therapies, and pharmacoepidemiology are also encouraged. Subject areas include (but are by no means limited to): Acute coronary syndrome Arrhythmias Atherosclerosis Basic cardiac electrophysiology Cardiac catheterization Cardiac remodeling Coagulation and thrombosis Diabetic cardiovascular disease Heart failure (systolic HF, HFrEF, diastolic HF, HFpEF) Hyperlipidemia Hypertension Ischemic heart disease Vascular biology Ventricular assist devices Molecular cardio-biology Myocardial regeneration Lipoprotein metabolism Radial artery access Percutaneous coronary intervention Transcatheter aortic and mitral valve replacement.
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