用基于图的机器学习方法预测氧化还原电位

IF 3.4 3区 化学 Q2 CHEMISTRY, MULTIDISCIPLINARY
Linlin Jia, Éric Brémond, Larissa Zaida, Benoit Gaüzère, Vincent Tognetti, Laurent Joubert
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引用次数: 0

摘要

氧化电位和还原电位的评估是各个化学领域的一项关键任务。然而,通过理论计算对其进行准确预测是一项补充任务,有时甚至是实验测量的唯一替代方案,但这往往需要耗费大量资源和时间。本文通过应用机器学习技术来应对这一挑战,尤其关注基于图的方法(如图编辑距离、图核和图神经网络),并对其与理论化学的深层联系进行了评述。为此,我们建立了 ORedOx159 数据库,这是一个全面、同质(参考值来自密度泛函理论计算)、可靠的资源,包含 318 个单电子还原和氧化反应,以 159 种大型有机化合物为特色。随后,我们对机器学习的良好实践和常用机器学习模型进行了指导性概述。然后,我们通过大量分析评估了这些模型在 ORedOx159 数据集上的预测性能。我们使用几乎以瞬时方式计算的描述符进行的模拟显著提高了预测准确性,还原电位的平均绝对误差(MAE)值为 5.6 kcal mol-1$$ {}^{-1} $$,氧化电位的平均绝对误差(MAE)值为 7.2 kcal mol-1$$ {}^{-1} $$,这为新型电化学系统的高效硅设计铺平了道路。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Predicting redox potentials by graph-based machine learning methods

Predicting redox potentials by graph-based machine learning methods

The evaluation of oxidation and reduction potentials is a pivotal task in various chemical fields. However, their accurate prediction by theoretical computations, which is a complementary task and sometimes the only alternative to experimental measurement, may be often resource-intensive and time-consuming. This paper addresses this challenge through the application of machine learning techniques, with a particular focus on graph-based methods (such as graph edit distances, graph kernels, and graph neural networks) that are reviewed to enlighten their deep links with theoretical chemistry. To this aim, we establish the ORedOx159 database, a comprehensive, homogeneous (with reference values stemming from density functional theory calculations), and reliable resource containing 318 one-electron reduction and oxidation reactions and featuring 159 large organic compounds. Subsequently, we provide an instructive overview of the good practice in machine learning and of commonly utilized machine learning models. We then assess their predictive performances on the ORedOx159 dataset through extensive analyses. Our simulations using descriptors that are computed in an almost instantaneous way result in a notable improvement in prediction accuracy, with mean absolute error (MAE) values equal to 5.6 kcal mol 1 for reduction and 7.2 kcal mol 1 for oxidation potentials, which paves a way toward efficient in silico design of new electrochemical systems.

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来源期刊
CiteScore
6.60
自引率
3.30%
发文量
247
审稿时长
1.7 months
期刊介绍: This distinguished journal publishes articles concerned with all aspects of computational chemistry: analytical, biological, inorganic, organic, physical, and materials. The Journal of Computational Chemistry presents original research, contemporary developments in theory and methodology, and state-of-the-art applications. Computational areas that are featured in the journal include ab initio and semiempirical quantum mechanics, density functional theory, molecular mechanics, molecular dynamics, statistical mechanics, cheminformatics, biomolecular structure prediction, molecular design, and bioinformatics.
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