PCa-RadHop:用于具有临床意义的前列腺癌分割的透明轻量级前馈方法

IF 5.4 2区 医学 Q1 ENGINEERING, BIOMEDICAL
Vasileios Magoulianitis , Jiaxin Yang , Yijing Yang , Jintang Xue , Masatomo Kaneko , Giovanni Cacciamani , Andre Abreu , Vinay Duddalwar , C.-C. Jay Kuo , Inderbir S. Gill , Chrysostomos Nikias
{"title":"PCa-RadHop:用于具有临床意义的前列腺癌分割的透明轻量级前馈方法","authors":"Vasileios Magoulianitis ,&nbsp;Jiaxin Yang ,&nbsp;Yijing Yang ,&nbsp;Jintang Xue ,&nbsp;Masatomo Kaneko ,&nbsp;Giovanni Cacciamani ,&nbsp;Andre Abreu ,&nbsp;Vinay Duddalwar ,&nbsp;C.-C. Jay Kuo ,&nbsp;Inderbir S. Gill ,&nbsp;Chrysostomos Nikias","doi":"10.1016/j.compmedimag.2024.102408","DOIUrl":null,"url":null,"abstract":"<div><p>Prostate Cancer is one of the most frequently occurring cancers in men, with a low survival rate if not early diagnosed. PI-RADS reading has a high false positive rate, thus increasing the diagnostic incurred costs and patient discomfort. Deep learning (DL) models achieve a high segmentation performance, although require a large model size and complexity. Also, DL models lack of feature interpretability and are perceived as “black-boxes” in the medical field. PCa-RadHop pipeline is proposed in this work, aiming to provide a more transparent feature extraction process using a linear model. It adopts the recently introduced Green Learning (GL) paradigm, which offers a small model size and low complexity. PCa-RadHop consists of two stages: Stage-1 extracts data-driven radiomics features from the bi-parametric Magnetic Resonance Imaging (bp-MRI) input and predicts an initial heatmap. To reduce the false positive rate, a subsequent stage-2 is introduced to refine the predictions by including more contextual information and radiomics features from each already detected Region of Interest (ROI). Experiments on the largest publicly available dataset, PI-CAI, show a competitive performance standing of the proposed method among other deep DL models, achieving an area under the curve (AUC) of 0.807 among a cohort of 1,000 patients. Moreover, PCa-RadHop maintains orders of magnitude smaller model size and complexity.</p></div>","PeriodicalId":50631,"journal":{"name":"Computerized Medical Imaging and Graphics","volume":"116 ","pages":"Article 102408"},"PeriodicalIF":5.4000,"publicationDate":"2024-06-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"PCa-RadHop: A transparent and lightweight feed-forward method for clinically significant prostate cancer segmentation\",\"authors\":\"Vasileios Magoulianitis ,&nbsp;Jiaxin Yang ,&nbsp;Yijing Yang ,&nbsp;Jintang Xue ,&nbsp;Masatomo Kaneko ,&nbsp;Giovanni Cacciamani ,&nbsp;Andre Abreu ,&nbsp;Vinay Duddalwar ,&nbsp;C.-C. Jay Kuo ,&nbsp;Inderbir S. Gill ,&nbsp;Chrysostomos Nikias\",\"doi\":\"10.1016/j.compmedimag.2024.102408\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><p>Prostate Cancer is one of the most frequently occurring cancers in men, with a low survival rate if not early diagnosed. PI-RADS reading has a high false positive rate, thus increasing the diagnostic incurred costs and patient discomfort. Deep learning (DL) models achieve a high segmentation performance, although require a large model size and complexity. Also, DL models lack of feature interpretability and are perceived as “black-boxes” in the medical field. PCa-RadHop pipeline is proposed in this work, aiming to provide a more transparent feature extraction process using a linear model. It adopts the recently introduced Green Learning (GL) paradigm, which offers a small model size and low complexity. PCa-RadHop consists of two stages: Stage-1 extracts data-driven radiomics features from the bi-parametric Magnetic Resonance Imaging (bp-MRI) input and predicts an initial heatmap. To reduce the false positive rate, a subsequent stage-2 is introduced to refine the predictions by including more contextual information and radiomics features from each already detected Region of Interest (ROI). Experiments on the largest publicly available dataset, PI-CAI, show a competitive performance standing of the proposed method among other deep DL models, achieving an area under the curve (AUC) of 0.807 among a cohort of 1,000 patients. Moreover, PCa-RadHop maintains orders of magnitude smaller model size and complexity.</p></div>\",\"PeriodicalId\":50631,\"journal\":{\"name\":\"Computerized Medical Imaging and Graphics\",\"volume\":\"116 \",\"pages\":\"Article 102408\"},\"PeriodicalIF\":5.4000,\"publicationDate\":\"2024-06-10\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Computerized Medical Imaging and Graphics\",\"FirstCategoryId\":\"5\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S0895611124000855\",\"RegionNum\":2,\"RegionCategory\":\"医学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"ENGINEERING, BIOMEDICAL\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Computerized Medical Imaging and Graphics","FirstCategoryId":"5","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S0895611124000855","RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"ENGINEERING, BIOMEDICAL","Score":null,"Total":0}
引用次数: 0

摘要

前列腺癌是男性最常见的癌症之一,如不及早诊断,存活率很低。PI-RADS 读数的假阳性率很高,从而增加了诊断成本和患者的不适感。深度学习(DL)模型可实现较高的分割性能,但需要较大的模型规模和复杂度。此外,深度学习模型缺乏特征可解释性,在医疗领域被视为 "黑盒子"。本研究提出了 PCa-RadHop 管道,旨在使用线性模型提供更透明的特征提取过程。它采用了最近推出的绿色学习(GL)范式,具有模型小、复杂度低的特点。PCa-RadHop 包括两个阶段:第一阶段从双参数磁共振成像(bp-MRI)输入中提取数据驱动的放射组学特征,并预测初始热图。为了降低误报率,随后引入了第二阶段,通过从每个已检测到的感兴趣区(ROI)中纳入更多上下文信息和放射组学特征来完善预测。在最大的公开可用数据集 PI-CAI 上进行的实验表明,与其他深度 DL 模型相比,所提出的方法具有很强的性能竞争力,在 1,000 名患者中的曲线下面积(AUC)达到了 0.807。此外,PCa-RadHop 的模型大小和复杂程度都要小得多。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
PCa-RadHop: A transparent and lightweight feed-forward method for clinically significant prostate cancer segmentation

Prostate Cancer is one of the most frequently occurring cancers in men, with a low survival rate if not early diagnosed. PI-RADS reading has a high false positive rate, thus increasing the diagnostic incurred costs and patient discomfort. Deep learning (DL) models achieve a high segmentation performance, although require a large model size and complexity. Also, DL models lack of feature interpretability and are perceived as “black-boxes” in the medical field. PCa-RadHop pipeline is proposed in this work, aiming to provide a more transparent feature extraction process using a linear model. It adopts the recently introduced Green Learning (GL) paradigm, which offers a small model size and low complexity. PCa-RadHop consists of two stages: Stage-1 extracts data-driven radiomics features from the bi-parametric Magnetic Resonance Imaging (bp-MRI) input and predicts an initial heatmap. To reduce the false positive rate, a subsequent stage-2 is introduced to refine the predictions by including more contextual information and radiomics features from each already detected Region of Interest (ROI). Experiments on the largest publicly available dataset, PI-CAI, show a competitive performance standing of the proposed method among other deep DL models, achieving an area under the curve (AUC) of 0.807 among a cohort of 1,000 patients. Moreover, PCa-RadHop maintains orders of magnitude smaller model size and complexity.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
CiteScore
10.70
自引率
3.50%
发文量
71
审稿时长
26 days
期刊介绍: The purpose of the journal Computerized Medical Imaging and Graphics is to act as a source for the exchange of research results concerning algorithmic advances, development, and application of digital imaging in disease detection, diagnosis, intervention, prevention, precision medicine, and population health. Included in the journal will be articles on novel computerized imaging or visualization techniques, including artificial intelligence and machine learning, augmented reality for surgical planning and guidance, big biomedical data visualization, computer-aided diagnosis, computerized-robotic surgery, image-guided therapy, imaging scanning and reconstruction, mobile and tele-imaging, radiomics, and imaging integration and modeling with other information relevant to digital health. The types of biomedical imaging include: magnetic resonance, computed tomography, ultrasound, nuclear medicine, X-ray, microwave, optical and multi-photon microscopy, video and sensory imaging, and the convergence of biomedical images with other non-imaging datasets.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信