利用改进的残差编码器-解码器网络获取高质量的活细胞原子力显微镜图像。

IF 3 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY
Junxi Wang , Fan Yang , Bowei Wang , Mengnan Liu , Xia Wang , Rui Wang , Guicai Song , Zuobin Wang
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引用次数: 0

摘要

原子力显微镜能够对活细胞进行超精密成像。然而,原子力显微镜成像是一个复杂而耗时的过程。获得的活细胞图像通常分辨率较低,且容易受噪声影响,导致成像质量不理想,阻碍了基于细胞图像的研究和分析。本文提出了一种基于残差编码器-解码器的自适应注意力图像重建网络,通过将深度学习技术与原子力显微镜成像技术相结合,支持高质量的细胞图像采集。与其他基于学习的方法相比,所提出的网络具有更高的峰值信噪比、更高的结构相似性和更好的图像重建性能。此外,将每种方法重建的细胞图像用于细胞识别,结果表明拟议网络重建的细胞图像具有最高的细胞识别率。提出的网络为基于原子力显微镜的活细胞成像和细胞图像重建带来了启示,在生物和医学研究中具有重要意义。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

High-quality AFM image acquisition of living cells by modified residual encoder-decoder network

High-quality AFM image acquisition of living cells by modified residual encoder-decoder network

Atomic force microscope enables ultra-precision imaging of living cells. However, atomic force microscope imaging is a complex and time-consuming process. The obtained images of living cells usually have low resolution and are easily influenced by noise leading to unsatisfactory imaging quality, obstructing the research and analysis based on cell images. Herein, an adaptive attention image reconstruction network based on residual encoder-decoder was proposed, through the combination of deep learning technology and atomic force microscope imaging supporting high-quality cell image acquisition. Compared with other learning-based methods, the proposed network showed higher peak signal-to-noise ratio, higher structural similarity and better image reconstruction performances. In addition, the cell images reconstructed by each method were used for cell recognition, and the cell images reconstructed by the proposed network had the highest cell recognition rate. The proposed network has brought insights into the atomic force microscope-based imaging of living cells and cell image reconstruction, which is of great significance in biological and medical research.

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来源期刊
Journal of structural biology
Journal of structural biology 生物-生化与分子生物学
CiteScore
6.30
自引率
3.30%
发文量
88
审稿时长
65 days
期刊介绍: Journal of Structural Biology (JSB) has an open access mirror journal, the Journal of Structural Biology: X (JSBX), sharing the same aims and scope, editorial team, submission system and rigorous peer review. Since both journals share the same editorial system, you may submit your manuscript via either journal homepage. You will be prompted during submission (and revision) to choose in which to publish your article. The editors and reviewers are not aware of the choice you made until the article has been published online. JSB and JSBX publish papers dealing with the structural analysis of living material at every level of organization by all methods that lead to an understanding of biological function in terms of molecular and supermolecular structure. Techniques covered include: • Light microscopy including confocal microscopy • All types of electron microscopy • X-ray diffraction • Nuclear magnetic resonance • Scanning force microscopy, scanning probe microscopy, and tunneling microscopy • Digital image processing • Computational insights into structure
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