Hemalatha Balasubramanian, Aarifa Muhammed Ashraf, Srikanth Karuppannan, Kumaradhas Poomani
{"title":"2-amino-3-methylpyridine 与羧酸衍生物盐的合成和结构研究:实验和理论研究。","authors":"Hemalatha Balasubramanian, Aarifa Muhammed Ashraf, Srikanth Karuppannan, Kumaradhas Poomani","doi":"10.1107/S2053229624005473","DOIUrl":null,"url":null,"abstract":"<p><p>The salts bis(2-amino-3-methylpyridinium) fumarate dihydrate, 2C<sub>6</sub>H<sub>9</sub>N<sub>2</sub><sup>+</sup>·C<sub>4</sub>H<sub>2</sub>O<sub>2</sub><sup>2-</sup>·2H<sub>2</sub>O (I), and 2-amino-3-methylpyridinium 5-chlorosalicylate, C<sub>6</sub>H<sub>9</sub>N<sub>2</sub><sup>+</sup>·C<sub>7</sub>H<sub>4</sub>ClO<sub>3</sub><sup>-</sup> (II), were synthesized from 2-amino-3-methylpyridine with fumaric acid and 5-chlorosalicylic acid, respectively. The crystal structures of these salts were characterized by single-crystal X-ray diffraction, revealing protonation in I and II by the transfer of a H atom from the acid to the pyridine base. In the crystals of both I and II, N-H...O interactions form an R<sub>2</sub><sup>2</sup>(8) ring motif. Hirshfeld surface analysis distinguishes the interactions present in the crystal structures of I and II, and the two-dimensional (2D) fingerprint plot analysis shows the percentage contribution of each type of interaction in the crystal packing. The volumes of the crystal voids of I (39.65 Å<sup>3</sup>) and II (118.10 Å<sup>3</sup>) have been calculated and reveal that the crystal of I is more mechanically stable than II. Frontier molecular orbital (FMO) analysis predicts that the band gap energy of II (2.6577 eV) is lower compared to I (4.0035 eV). The Quantum Theory of Atoms In Molecules (QTAIM) analysis shows that the pyridinium-carboxylate N-H...O interaction present in I is stronger than the other interactions, whereas in II, the hydroxy-carboxylate O-H...O interaction is stronger than the pyridinium-carboxylate N-H...O interaction; the bond dissociation energies also confirm these results. The positive Laplacian [∇<sup>2</sup>ρ(r) > 0] of these interactions shows that the interactions are of the closed shell type. An in-silico ADME (Absorption, Distribution, Metabolism and Excretion) study predicts that both salts will exhibit good pharmacokinetic properties and druglikeness.</p>","PeriodicalId":7115,"journal":{"name":"Acta Crystallographica Section C Structural Chemistry","volume":null,"pages":null},"PeriodicalIF":0.7000,"publicationDate":"2024-07-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Synthesis and structural investigation of salts of 2-amino-3-methylpyridine with carboxylic acid derivatives: an experimental and theoretical study.\",\"authors\":\"Hemalatha Balasubramanian, Aarifa Muhammed Ashraf, Srikanth Karuppannan, Kumaradhas Poomani\",\"doi\":\"10.1107/S2053229624005473\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>The salts bis(2-amino-3-methylpyridinium) fumarate dihydrate, 2C<sub>6</sub>H<sub>9</sub>N<sub>2</sub><sup>+</sup>·C<sub>4</sub>H<sub>2</sub>O<sub>2</sub><sup>2-</sup>·2H<sub>2</sub>O (I), and 2-amino-3-methylpyridinium 5-chlorosalicylate, C<sub>6</sub>H<sub>9</sub>N<sub>2</sub><sup>+</sup>·C<sub>7</sub>H<sub>4</sub>ClO<sub>3</sub><sup>-</sup> (II), were synthesized from 2-amino-3-methylpyridine with fumaric acid and 5-chlorosalicylic acid, respectively. The crystal structures of these salts were characterized by single-crystal X-ray diffraction, revealing protonation in I and II by the transfer of a H atom from the acid to the pyridine base. In the crystals of both I and II, N-H...O interactions form an R<sub>2</sub><sup>2</sup>(8) ring motif. Hirshfeld surface analysis distinguishes the interactions present in the crystal structures of I and II, and the two-dimensional (2D) fingerprint plot analysis shows the percentage contribution of each type of interaction in the crystal packing. The volumes of the crystal voids of I (39.65 Å<sup>3</sup>) and II (118.10 Å<sup>3</sup>) have been calculated and reveal that the crystal of I is more mechanically stable than II. Frontier molecular orbital (FMO) analysis predicts that the band gap energy of II (2.6577 eV) is lower compared to I (4.0035 eV). The Quantum Theory of Atoms In Molecules (QTAIM) analysis shows that the pyridinium-carboxylate N-H...O interaction present in I is stronger than the other interactions, whereas in II, the hydroxy-carboxylate O-H...O interaction is stronger than the pyridinium-carboxylate N-H...O interaction; the bond dissociation energies also confirm these results. The positive Laplacian [∇<sup>2</sup>ρ(r) > 0] of these interactions shows that the interactions are of the closed shell type. 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引用次数: 0
摘要
2C6H9N2+-C4H2O22--2H2O (I) 和 2-amino-3-methylpyridinium 5-chlorosalicylate C6H9N2+-C7H4ClO3- (II) 分别由 2-amino-3-methylpyridine 与富马酸和 5-chlorosalicylic acid 合成。通过单晶 X 射线衍射对这些盐的晶体结构进行了表征,发现 I 和 II 中的质子化是通过一个 H 原子从酸转移到吡啶碱而实现的。在 I 和 II 的晶体中,N-H...O 相互作用形成了一个 R22(8) 环图案。Hirshfeld 表面分析可以区分 I 和 II 晶体结构中存在的相互作用,而二维(2D)指纹图谱分析则显示了每种相互作用在晶体堆积中所占的百分比。对 I(39.65 Å3)和 II(118.10 Å3)的晶体空隙体积进行了计算,结果表明 I 晶体的机械稳定性高于 II 晶体。前沿分子轨道(FMO)分析预测 II 的带隙能(2.6577 eV)低于 I 的带隙能(4.0035 eV)。分子中原子量子理论(QTAIM)分析表明,I 中存在的吡啶鎓羧酸盐 N-H...O 相互作用强于其他作用,而 II 中羟基羧酸盐 O-H...O 相互作用强于吡啶鎓羧酸盐 N-H...O 相互作用;键解离能也证实了这些结果。这些相互作用的正拉普拉斯[∇2ρ(r) > 0]表明这些相互作用属于闭壳类型。根据 "吸收、分布、代谢和排泄"(in-silico ADME)研究预测,这两种盐都将表现出良好的药代动力学特性和药物亲和性。
Synthesis and structural investigation of salts of 2-amino-3-methylpyridine with carboxylic acid derivatives: an experimental and theoretical study.
The salts bis(2-amino-3-methylpyridinium) fumarate dihydrate, 2C6H9N2+·C4H2O22-·2H2O (I), and 2-amino-3-methylpyridinium 5-chlorosalicylate, C6H9N2+·C7H4ClO3- (II), were synthesized from 2-amino-3-methylpyridine with fumaric acid and 5-chlorosalicylic acid, respectively. The crystal structures of these salts were characterized by single-crystal X-ray diffraction, revealing protonation in I and II by the transfer of a H atom from the acid to the pyridine base. In the crystals of both I and II, N-H...O interactions form an R22(8) ring motif. Hirshfeld surface analysis distinguishes the interactions present in the crystal structures of I and II, and the two-dimensional (2D) fingerprint plot analysis shows the percentage contribution of each type of interaction in the crystal packing. The volumes of the crystal voids of I (39.65 Å3) and II (118.10 Å3) have been calculated and reveal that the crystal of I is more mechanically stable than II. Frontier molecular orbital (FMO) analysis predicts that the band gap energy of II (2.6577 eV) is lower compared to I (4.0035 eV). The Quantum Theory of Atoms In Molecules (QTAIM) analysis shows that the pyridinium-carboxylate N-H...O interaction present in I is stronger than the other interactions, whereas in II, the hydroxy-carboxylate O-H...O interaction is stronger than the pyridinium-carboxylate N-H...O interaction; the bond dissociation energies also confirm these results. The positive Laplacian [∇2ρ(r) > 0] of these interactions shows that the interactions are of the closed shell type. An in-silico ADME (Absorption, Distribution, Metabolism and Excretion) study predicts that both salts will exhibit good pharmacokinetic properties and druglikeness.
期刊介绍:
Acta Crystallographica Section C: Structural Chemistry is continuing its transition to a journal that publishes exciting science with structural content, in particular, important results relating to the chemical sciences. Section C is the journal of choice for the rapid publication of articles that highlight interesting research facilitated by the determination, calculation or analysis of structures of any type, other than macromolecular structures. Articles that emphasize the science and the outcomes that were enabled by the study are particularly welcomed. Authors are encouraged to include mainstream science in their papers, thereby producing manuscripts that are substantial scientific well-rounded contributions that appeal to a broad community of readers and increase the profile of the authors.