生物多样性数字双胞胎原型:DNA 代谢标本取样地点的优先排序

Tobias Frøslev, Robin Boyd, Dmitry Schigel
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引用次数: 0

摘要

环境 DNA(eDNA)代谢编码技术的进步彻底改变了我们评估生物多样性的能力,尤其是对隐蔽生物或研究较少的生物,如真菌、细菌和微小无脊椎动物。尽管 eDNA 具有成本效益,但由于处理和分析 eDNA 样品需要大量的时间和资源,因此采样地点的空间选择仍然是一项严峻的挑战。本研究介绍了生物多样性数字孪生原型,旨在优化 eDNA 采样地点的选择和优先排序。利用现有的 eDNA 数据并结合用户定义的标准,该数字孪生系统有助于在选择未来采样地点时做出明智的决策。通过开发相关的数据格式化工具,我们还能为更广泛的保护工作提供 DNA 元条码数据的可访问性和实用性。该原型将为从研究人员、监测计划到商业企业等多个终端用户提供服务,根据未来样本的估计互补性,为互动探索和优先排序提供直观的界面。该原型为生物多样性采样提供了一种可扩展的方法。最终,该工具旨在完善我们对全球生物多样性模式的理解,并通过高效的 eDNA 采样支持有针对性的保护战略。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Prototype Biodiversity Digital Twin: prioritisation of DNA metabarcoding sampling locations
Advancements in environmental DNA (eDNA) metabarcoding have revolutionised our capacity to assess biodiversity, especially for cryptic or less-studied organisms, such as fungi, bacteria and micro-invertebrates. Despite its cost-effectiveness, the spatial selection for sampling sites remains a critical challenge due to the considerable time and resources required for processing and analysing eDNA samples. This study introduces a Biodiversity Digital Twin Prototype, aimed at optimising the selection and prioritisation of eDNA sampling locations. Leveraging available eDNA data and integrating user-defined criteria, this digital twin facilitates informed decision-making in selecting future sampling sites. Through the development of an associated data formatting tool, we also facilitate the accessibility and utility of DNA metabarcoding data for broader conservation efforts. This prototype will serve multiple end-users, from researchers and monitoring initiatives to commercial enterprises, by providing an intuitive interface for interactive exploration and prioritisation, based on estimated complementarity of future samples. The prototype offers a scalable approach to biodiversity sampling. Ultimately, this tool aims to refine our understanding of global biodiversity patterns and support targeted conservation strategies through efficient eDNA sampling.
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