通过 WGCNA 网络鉴定坏死在类风湿性关节炎中的作用。

IF 3.3 4区 医学 Q3 IMMUNOLOGY
Autoimmunity Pub Date : 2024-12-01 Epub Date: 2024-06-13 DOI:10.1080/08916934.2024.2358069
Feige Nian, Yiwen Wang, Mingfeng Yang, Bin Zhang
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引用次数: 0

摘要

类风湿性关节炎(RA)是炎症性关节炎的主要表现形式,其发病率和死亡率不断上升。目前,人们对参与类风湿性关节炎患者滑膜炎症的基因和信号通路之间错综复杂的相互作用仍缺乏足够的了解。本研究旨在确定坏死在 RA 中的作用及其与免疫细胞浸润的关系。研究采用了差异表达分析和加权基因共表达网络分析(WGCNA)来确定 RA 的中心基因。在这项研究中,共鉴定出 28 个差异表达基因(DEGs)。利用 WGCNA,生成了两个共表达模块,其中一个模块与 RA 的相关性最强。通过整合差异基因表达分析,共发现了 5 个交叉基因。通过接收者操作特征曲线(ROC)分析,发现这5个枢纽基因,即肉瘤融合基因(FUS)、变压器2β同源基因(TRA2B)、真核翻译伸长因子2(EEF2)、裂解和多腺苷酸化特异性因子6(CPSF6)以及信号转导和转录激活因子3(STAT3)具有显著的诊断价值。各种免疫细胞浓度之间的密切联系预计将有助于 RA 的诊断和治疗。此外,前面提到的免疫细胞浸润很可能对该病的发病产生重大影响。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Identification the role of necroptosis in rheumatoid arthritis by WGCNA network.

Rheumatoid arthritis (RA) is the predominant manifestation of inflammatory arthritis, distinguished by an increasing burden of morbidity and mortality. The intricate interplay of genes and signalling pathways involved in synovial inflammation in patients with RA remains inadequately comprehended. This study aimed to ascertain the role of necroptosis in RA, as along with their associations with immune cell infiltration. Differential expression analysis and weighted gene co-expression network analysis (WGCNA) were employed to identify central genes for RA. In this study, identified total of 28 differentially expressed genes (DEGs) were identified in RA. Utilising WGCNA, two co-expression modules were generated, with one module demonstrating the strongest correlation with RA. Through the integration of differential gene expression analysis, a total of 5 intersecting genes were discovered. These 5 hub genes, namely fused in sarcoma (FUS), transformer 2 beta homolog (TRA2B), eukaryotic translation elongation factor 2 (EEF2), cleavage and polyadenylation specific factor 6 (CPSF6) and signal transducer and activator of transcription 3 (STAT3) were found to possess significant diagnostic value as determined by receiver operating characteristic (ROC) curve analysis. The close association between the concentrations of various immune cells is anticipated to contribute to the diagnosis and treatment of RA. Furthermore, the infiltration of immune cells mentioned earlier is likely to exert a substantial influence on the initiation of this disease.

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来源期刊
Autoimmunity
Autoimmunity 医学-免疫学
CiteScore
5.70
自引率
8.60%
发文量
59
审稿时长
6-12 weeks
期刊介绍: Autoimmunity is an international, peer reviewed journal that publishes articles on cell and molecular immunology, immunogenetics, molecular biology and autoimmunity. Current understanding of immunity and autoimmunity is being furthered by the progress in new molecular sciences that has recently been little short of spectacular. In addition to the basic elements and mechanisms of the immune system, Autoimmunity is interested in the cellular and molecular processes associated with systemic lupus erythematosus, rheumatoid arthritis, Sjogren syndrome, type I diabetes, multiple sclerosis and other systemic and organ-specific autoimmune disorders. The journal reflects the immunology areas where scientific progress is most rapid. It is a valuable tool to basic and translational researchers in cell biology, genetics and molecular biology of immunity and autoimmunity.
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