探索银杏双黄酮的细胞毒性潜力:结合 LC-HRMS 代谢组学和数据库挖掘、靶向分离、网络药理学、体外细胞毒性和对接研究进行精确鉴定。

IF 3.2 4区 医学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY
Bharat Sahu, Sanheeta Chakrabarty, Vaishali Saini, Meenakshi Kandpal, Bharat Goel, Sanju Kumari, Ijaz Ahmed, Hem Chandra Jha, Shreyans K. Jain
{"title":"探索银杏双黄酮的细胞毒性潜力:结合 LC-HRMS 代谢组学和数据库挖掘、靶向分离、网络药理学、体外细胞毒性和对接研究进行精确鉴定。","authors":"Bharat Sahu,&nbsp;Sanheeta Chakrabarty,&nbsp;Vaishali Saini,&nbsp;Meenakshi Kandpal,&nbsp;Bharat Goel,&nbsp;Sanju Kumari,&nbsp;Ijaz Ahmed,&nbsp;Hem Chandra Jha,&nbsp;Shreyans K. Jain","doi":"10.1111/cbdd.14564","DOIUrl":null,"url":null,"abstract":"<p>The leaves of <i>Araucaria cunninghamii</i> are known to be nonedible and toxic. Previous studies have identified biflavones in various <i>Araucaria</i> species. This study aimed to investigate the in vitro cytotoxicity of the isolated compounds from <i>Araucaria cunninghamii</i> after metabolomics and network pharmacological analysis. Methanol extract of <i>Araucaria cunninghamii</i> leaves was subjected to bioassay-guided fractionation. The active fraction was analyzed using LC-HRMS, through strategic database mining, by comparing the data to the Dictionary of Natural Products to identify 12 biflavones, along with abietic acid, beta-sitosterol, and phthalate. Eight compounds were screened for network pharmacology study, where in silico ADME analysis, prediction of gene targets, compound-gene-pathway network and hierarchical network analysis, protein–protein interaction, KEGG pathway, and Gene Ontology analyses were done, that showed PI3KR1, EGFR, GSK3B, and ABCB1 as the common targets for all the compounds that may act in the gastric cancer pathway. Simultaneously, four biflavones were isolated via chromatography and identified through NMR as dimeric apigenin with varying methoxy substitutions. Cytotoxicity study against the AGS cell line for gastric cancer showed that AC1 biflavone (IC<sub>50</sub> 90.58 μM) exhibits the highest cytotoxicity and monomeric apigenin (IC<sub>50</sub> 174.5 μM) the lowest. Besides, the biflavones were docked to the previously identified targets to analyze their binding affinities, and all the ligands were found to bind with energy ≤−7 Kcal/mol.</p>","PeriodicalId":143,"journal":{"name":"Chemical Biology & Drug Design","volume":null,"pages":null},"PeriodicalIF":3.2000,"publicationDate":"2024-06-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Exploring the cytotoxic potential of biflavones of Araucaria cunninghamii: Precise identification combined by LC-HRMS-metabolomics and database mining, targeted isolation, network pharmacology, in vitro cytotoxicity, and docking studies\",\"authors\":\"Bharat Sahu,&nbsp;Sanheeta Chakrabarty,&nbsp;Vaishali Saini,&nbsp;Meenakshi Kandpal,&nbsp;Bharat Goel,&nbsp;Sanju Kumari,&nbsp;Ijaz Ahmed,&nbsp;Hem Chandra Jha,&nbsp;Shreyans K. Jain\",\"doi\":\"10.1111/cbdd.14564\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p>The leaves of <i>Araucaria cunninghamii</i> are known to be nonedible and toxic. Previous studies have identified biflavones in various <i>Araucaria</i> species. This study aimed to investigate the in vitro cytotoxicity of the isolated compounds from <i>Araucaria cunninghamii</i> after metabolomics and network pharmacological analysis. Methanol extract of <i>Araucaria cunninghamii</i> leaves was subjected to bioassay-guided fractionation. The active fraction was analyzed using LC-HRMS, through strategic database mining, by comparing the data to the Dictionary of Natural Products to identify 12 biflavones, along with abietic acid, beta-sitosterol, and phthalate. Eight compounds were screened for network pharmacology study, where in silico ADME analysis, prediction of gene targets, compound-gene-pathway network and hierarchical network analysis, protein–protein interaction, KEGG pathway, and Gene Ontology analyses were done, that showed PI3KR1, EGFR, GSK3B, and ABCB1 as the common targets for all the compounds that may act in the gastric cancer pathway. Simultaneously, four biflavones were isolated via chromatography and identified through NMR as dimeric apigenin with varying methoxy substitutions. Cytotoxicity study against the AGS cell line for gastric cancer showed that AC1 biflavone (IC<sub>50</sub> 90.58 μM) exhibits the highest cytotoxicity and monomeric apigenin (IC<sub>50</sub> 174.5 μM) the lowest. Besides, the biflavones were docked to the previously identified targets to analyze their binding affinities, and all the ligands were found to bind with energy ≤−7 Kcal/mol.</p>\",\"PeriodicalId\":143,\"journal\":{\"name\":\"Chemical Biology & Drug Design\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":3.2000,\"publicationDate\":\"2024-06-07\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Chemical Biology & Drug Design\",\"FirstCategoryId\":\"3\",\"ListUrlMain\":\"https://onlinelibrary.wiley.com/doi/10.1111/cbdd.14564\",\"RegionNum\":4,\"RegionCategory\":\"医学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"BIOCHEMISTRY & MOLECULAR BIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Chemical Biology & Drug Design","FirstCategoryId":"3","ListUrlMain":"https://onlinelibrary.wiley.com/doi/10.1111/cbdd.14564","RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"BIOCHEMISTRY & MOLECULAR BIOLOGY","Score":null,"Total":0}
引用次数: 0

摘要

众所周知,Araucaria cunninghamii 的叶子不能食用,而且有毒。以前的研究发现了多种 Araucaria 品种中的双黄酮。本研究旨在通过代谢组学和网络药理学分析,研究从 Araucaria cunninghamii 中分离出的化合物的体外细胞毒性。研究采用生物测定指导下的分馏方法,对白芒花叶甲醇提取物进行分馏。通过战略性的数据库挖掘,将数据与《天然产品词典》进行比较,使用 LC-HRMS 对活性组分进行分析,从而鉴定出 12 种双黄酮类化合物以及阿比替酸、β-谷甾醇和邻苯二甲酸酯。筛选出的 8 种化合物进行了网络药理学研究,其中包括默观 ADME 分析、基因靶点预测、化合物-基因-通路网络和层次网络分析、蛋白质-蛋白质相互作用、KEGG 通路和基因本体分析,结果表明 PI3KR1、EGFR、GSK3B 和 ABCB1 是所有化合物的共同靶点,可能作用于胃癌通路。同时,通过色谱法分离出了四种双黄酮,并通过核磁共振鉴定出它们是具有不同甲氧基取代的二聚芹菜素。针对 AGS 胃癌细胞系的细胞毒性研究表明,AC1 双黄酮(IC50 90.58 μM)的细胞毒性最高,而单体芹菜素(IC50 174.5 μM)的细胞毒性最低。此外,还将双黄酮与先前确定的靶标进行了对接,以分析其结合亲和力,结果发现所有配体的结合能量均≤-7 Kcal/mol。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Exploring the cytotoxic potential of biflavones of Araucaria cunninghamii: Precise identification combined by LC-HRMS-metabolomics and database mining, targeted isolation, network pharmacology, in vitro cytotoxicity, and docking studies

Exploring the cytotoxic potential of biflavones of Araucaria cunninghamii: Precise identification combined by LC-HRMS-metabolomics and database mining, targeted isolation, network pharmacology, in vitro cytotoxicity, and docking studies

The leaves of Araucaria cunninghamii are known to be nonedible and toxic. Previous studies have identified biflavones in various Araucaria species. This study aimed to investigate the in vitro cytotoxicity of the isolated compounds from Araucaria cunninghamii after metabolomics and network pharmacological analysis. Methanol extract of Araucaria cunninghamii leaves was subjected to bioassay-guided fractionation. The active fraction was analyzed using LC-HRMS, through strategic database mining, by comparing the data to the Dictionary of Natural Products to identify 12 biflavones, along with abietic acid, beta-sitosterol, and phthalate. Eight compounds were screened for network pharmacology study, where in silico ADME analysis, prediction of gene targets, compound-gene-pathway network and hierarchical network analysis, protein–protein interaction, KEGG pathway, and Gene Ontology analyses were done, that showed PI3KR1, EGFR, GSK3B, and ABCB1 as the common targets for all the compounds that may act in the gastric cancer pathway. Simultaneously, four biflavones were isolated via chromatography and identified through NMR as dimeric apigenin with varying methoxy substitutions. Cytotoxicity study against the AGS cell line for gastric cancer showed that AC1 biflavone (IC50 90.58 μM) exhibits the highest cytotoxicity and monomeric apigenin (IC50 174.5 μM) the lowest. Besides, the biflavones were docked to the previously identified targets to analyze their binding affinities, and all the ligands were found to bind with energy ≤−7 Kcal/mol.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Chemical Biology & Drug Design
Chemical Biology & Drug Design 医学-生化与分子生物学
CiteScore
5.10
自引率
3.30%
发文量
164
审稿时长
4.4 months
期刊介绍: Chemical Biology & Drug Design is a peer-reviewed scientific journal that is dedicated to the advancement of innovative science, technology and medicine with a focus on the multidisciplinary fields of chemical biology and drug design. It is the aim of Chemical Biology & Drug Design to capture significant research and drug discovery that highlights new concepts, insight and new findings within the scope of chemical biology and drug design.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信