近临界机制中的穆勒棘轮:锦标赛与适应性比例选择。

IF 1.2 4区 生物学 Q4 ECOLOGY
J.L. Igelbrink , A. González Casanova , C. Smadi , A. Wakolbinger
{"title":"近临界机制中的穆勒棘轮:锦标赛与适应性比例选择。","authors":"J.L. Igelbrink ,&nbsp;A. González Casanova ,&nbsp;C. Smadi ,&nbsp;A. Wakolbinger","doi":"10.1016/j.tpb.2024.06.001","DOIUrl":null,"url":null,"abstract":"<div><p>Muller’s ratchet, in its prototype version, models a haploid, asexual population whose size <span><math><mi>N</mi></math></span> is constant over the generations. Slightly deleterious mutations are acquired along the lineages at a constant rate, and individuals carrying less mutations have a selective advantage. The classical variant considers <em>fitness proportional</em> selection, but other fitness schemes are conceivable as well. Inspired by the work of Etheridge et al. (2009) we propose a parameter scaling which fits well to the “near-critical” regime that was in the focus of Etheridge et al. (2009) (and in which the mutation–selection ratio diverges logarithmically as <span><math><mrow><mi>N</mi><mo>→</mo><mi>∞</mi></mrow></math></span>). Using a Moran model, we investigate the“rule of thumb” given in Etheridge et al. (2009) for the click rate of the “classical ratchet” by putting it into the context of new results on the long-time evolution of the size of the best class of the ratchet with (binary) tournament selection. This variant of Muller’s ratchet was introduced in González Casanova et al. (2023), and was analysed there in a subcritical parameter regime. Other than that of the classical ratchet, the size of the best class of the tournament ratchet follows an autonomous dynamics up to the time of its extinction. It turns out that, under a suitable correspondence of the model parameters, this dynamics coincides with the so called Poisson profile approximation of the dynamics of the best class of the classical ratchet.</p></div>","PeriodicalId":49437,"journal":{"name":"Theoretical Population Biology","volume":"158 ","pages":"Pages 121-138"},"PeriodicalIF":1.2000,"publicationDate":"2024-06-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S0040580924000613/pdfft?md5=39cd36b5168e3c4b5182ac2584e304f9&pid=1-s2.0-S0040580924000613-main.pdf","citationCount":"0","resultStr":"{\"title\":\"Muller’s ratchet in a near-critical regime: Tournament versus fitness proportional selection\",\"authors\":\"J.L. Igelbrink ,&nbsp;A. González Casanova ,&nbsp;C. Smadi ,&nbsp;A. Wakolbinger\",\"doi\":\"10.1016/j.tpb.2024.06.001\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><p>Muller’s ratchet, in its prototype version, models a haploid, asexual population whose size <span><math><mi>N</mi></math></span> is constant over the generations. Slightly deleterious mutations are acquired along the lineages at a constant rate, and individuals carrying less mutations have a selective advantage. The classical variant considers <em>fitness proportional</em> selection, but other fitness schemes are conceivable as well. Inspired by the work of Etheridge et al. (2009) we propose a parameter scaling which fits well to the “near-critical” regime that was in the focus of Etheridge et al. (2009) (and in which the mutation–selection ratio diverges logarithmically as <span><math><mrow><mi>N</mi><mo>→</mo><mi>∞</mi></mrow></math></span>). Using a Moran model, we investigate the“rule of thumb” given in Etheridge et al. (2009) for the click rate of the “classical ratchet” by putting it into the context of new results on the long-time evolution of the size of the best class of the ratchet with (binary) tournament selection. This variant of Muller’s ratchet was introduced in González Casanova et al. (2023), and was analysed there in a subcritical parameter regime. Other than that of the classical ratchet, the size of the best class of the tournament ratchet follows an autonomous dynamics up to the time of its extinction. It turns out that, under a suitable correspondence of the model parameters, this dynamics coincides with the so called Poisson profile approximation of the dynamics of the best class of the classical ratchet.</p></div>\",\"PeriodicalId\":49437,\"journal\":{\"name\":\"Theoretical Population Biology\",\"volume\":\"158 \",\"pages\":\"Pages 121-138\"},\"PeriodicalIF\":1.2000,\"publicationDate\":\"2024-06-04\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.sciencedirect.com/science/article/pii/S0040580924000613/pdfft?md5=39cd36b5168e3c4b5182ac2584e304f9&pid=1-s2.0-S0040580924000613-main.pdf\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Theoretical Population Biology\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S0040580924000613\",\"RegionNum\":4,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q4\",\"JCRName\":\"ECOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Theoretical Population Biology","FirstCategoryId":"99","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S0040580924000613","RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"ECOLOGY","Score":null,"Total":0}
引用次数: 0

摘要

穆勒棘轮模型的原型是一个单倍体无性种群,其规模 N 在世代中保持不变。轻微的有害突变以恒定的速度沿种系获得,携带较少突变的个体具有选择优势。经典变体考虑的是适合度比例选择,但也可以设想其他适合度方案。受 Etheridge 等人(2009 年)的研究启发,我们提出了一种参数缩放方法,该方法非常适合 Etheridge 等人(2009 年)重点研究的 "近临界 "机制(其中突变-选择比随着 N→∞ 的对数发散)。利用莫兰模型,我们研究了埃瑟里奇等人(2009)在 "经典棘轮 "点击率方面给出的 "经验法则",并将其与带有(二元)锦标赛选择的棘轮最佳类别大小的长期演化的新结果结合起来。González 等人(2023 年)介绍了穆勒棘轮的这一变体,并在亚临界参数机制下对其进行了分析。与经典的棘轮选择不同,锦标赛棘轮选择的最佳等级的大小在其消亡之前都是自主动态变化的。事实证明,在模型参数的适当对应关系下,这种动态与经典棘轮最佳类的动态的所谓泊松轮廓近似值相吻合。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Muller’s ratchet in a near-critical regime: Tournament versus fitness proportional selection

Muller’s ratchet, in its prototype version, models a haploid, asexual population whose size N is constant over the generations. Slightly deleterious mutations are acquired along the lineages at a constant rate, and individuals carrying less mutations have a selective advantage. The classical variant considers fitness proportional selection, but other fitness schemes are conceivable as well. Inspired by the work of Etheridge et al. (2009) we propose a parameter scaling which fits well to the “near-critical” regime that was in the focus of Etheridge et al. (2009) (and in which the mutation–selection ratio diverges logarithmically as N). Using a Moran model, we investigate the“rule of thumb” given in Etheridge et al. (2009) for the click rate of the “classical ratchet” by putting it into the context of new results on the long-time evolution of the size of the best class of the ratchet with (binary) tournament selection. This variant of Muller’s ratchet was introduced in González Casanova et al. (2023), and was analysed there in a subcritical parameter regime. Other than that of the classical ratchet, the size of the best class of the tournament ratchet follows an autonomous dynamics up to the time of its extinction. It turns out that, under a suitable correspondence of the model parameters, this dynamics coincides with the so called Poisson profile approximation of the dynamics of the best class of the classical ratchet.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Theoretical Population Biology
Theoretical Population Biology 生物-进化生物学
CiteScore
2.50
自引率
14.30%
发文量
43
审稿时长
6-12 weeks
期刊介绍: An interdisciplinary journal, Theoretical Population Biology presents articles on theoretical aspects of the biology of populations, particularly in the areas of demography, ecology, epidemiology, evolution, and genetics. Emphasis is on the development of mathematical theory and models that enhance the understanding of biological phenomena. Articles highlight the motivation and significance of the work for advancing progress in biology, relying on a substantial mathematical effort to obtain biological insight. The journal also presents empirical results and computational and statistical methods directly impinging on theoretical problems in population biology.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信