Hossein Shirali, Jeremy Hübner, Robin Both, Michael Raupach, Markus Reischl, Stefan Schmidt, Christian Pylatiuk
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引用次数: 0
摘要
膜翅目昆虫的多样性和个体数量均居昆虫之首。其中许多物种可作为食物来源、害虫控制者和授粉者发挥关键作用。然而,人们对其多样性和生物学特性知之甚少,约 80% 的物种尚未被描述。基于形态学的经典分类法是一个相当缓慢的过程,但 DNA 条形码已经在鉴定方面取得了相当大的进展。基于图像的识别和自动化等创新方法可以进一步加快这一过程。我们介绍了在 GBOL III 项目中获得的寄生蜂科 Diapriidae(膜翅目)图像数据识别的概念验证。我们对这些微小(1.2-4.5 毫米)的黄蜂进行了拍照,并使用 DNA 条形码进行了识别,从而为训练神经网络提供了坚实的基础数据。分类鉴定使用到了属一级。随后,对三种不同的神经网络架构进行了训练、评估和优化。结果,可以对 11 个不同的双翅目属和一个 "其他膜翅目 "混合组进行分类,平均准确率为 96%。此外,标本性别的自动分类准确率大于 97%。
Image-based recognition of parasitoid wasps using advanced neural networks.
Hymenoptera has some of the highest diversity and number of individuals among insects. Many of these species potentially play key roles as food sources, pest controllers and pollinators. However, little is known about the diversity and biology and ~80% of the species have not yet been described. Classical taxonomy based on morphology is a rather slow process but DNA barcoding has already brought considerable progress in identification. Innovative methods such as image-based identification and automation can further speed up the process. We present a proof of concept for image data recognition of a parasitic wasp family, the Diapriidae (Hymenoptera), obtained as part of the GBOL III project. These tiny (1.2-4.5mm) wasps were photographed and identified using DNA barcoding to provide a solid ground truth for training a neural network. Taxonomic identification was used down to the genus level. Subsequently, three different neural network architectures were trained, evaluated and optimised. As a result, 11 different genera of diaprids and one mixed group of 'other Hymenoptera' can be classified with an average accuracy of 96%. Additionally, the sex of the specimen can be classified automatically with an accuracy of >97%.
期刊介绍:
Invertebrate Systematics (formerly known as Invertebrate Taxonomy) is an international journal publishing original and significant contributions on the systematics, phylogeny and biogeography of all invertebrate taxa. Articles in the journal provide comprehensive treatments of clearly defined taxonomic groups, often emphasising their biodiversity patterns and/or biological aspects. The journal also includes contributions on the systematics of selected species that are of particular conservation, economic, medical or veterinary importance.
Invertebrate Systematics is a vital resource globally for scientists, students, conservation biologists, environmental consultants and government policy advisors who are interested in terrestrial, freshwater and marine systems.
Invertebrate Systematics is published with the endorsement of the Commonwealth Scientific and Industrial Research Organisation (CSIRO) and the Australian Academy of Science.