利用先进的神经网络对寄生蜂进行基于图像的识别。

IF 1.8 2区 生物学 Q3 EVOLUTIONARY BIOLOGY
Hossein Shirali, Jeremy Hübner, Robin Both, Michael Raupach, Markus Reischl, Stefan Schmidt, Christian Pylatiuk
{"title":"利用先进的神经网络对寄生蜂进行基于图像的识别。","authors":"Hossein Shirali, Jeremy Hübner, Robin Both, Michael Raupach, Markus Reischl, Stefan Schmidt, Christian Pylatiuk","doi":"10.1071/IS24011","DOIUrl":null,"url":null,"abstract":"<p><p>Hymenoptera has some of the highest diversity and number of individuals among insects. Many of these species potentially play key roles as food sources, pest controllers and pollinators. However, little is known about the diversity and biology and ~80% of the species have not yet been described. Classical taxonomy based on morphology is a rather slow process but DNA barcoding has already brought considerable progress in identification. Innovative methods such as image-based identification and automation can further speed up the process. We present a proof of concept for image data recognition of a parasitic wasp family, the Diapriidae (Hymenoptera), obtained as part of the GBOL III project. These tiny (1.2-4.5mm) wasps were photographed and identified using DNA barcoding to provide a solid ground truth for training a neural network. Taxonomic identification was used down to the genus level. Subsequently, three different neural network architectures were trained, evaluated and optimised. As a result, 11 different genera of diaprids and one mixed group of 'other Hymenoptera' can be classified with an average accuracy of 96%. Additionally, the sex of the specimen can be classified automatically with an accuracy of >97%.</p>","PeriodicalId":54927,"journal":{"name":"Invertebrate Systematics","volume":"38 ","pages":""},"PeriodicalIF":1.8000,"publicationDate":"2024-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Image-based recognition of parasitoid wasps using advanced neural networks.\",\"authors\":\"Hossein Shirali, Jeremy Hübner, Robin Both, Michael Raupach, Markus Reischl, Stefan Schmidt, Christian Pylatiuk\",\"doi\":\"10.1071/IS24011\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>Hymenoptera has some of the highest diversity and number of individuals among insects. Many of these species potentially play key roles as food sources, pest controllers and pollinators. However, little is known about the diversity and biology and ~80% of the species have not yet been described. Classical taxonomy based on morphology is a rather slow process but DNA barcoding has already brought considerable progress in identification. Innovative methods such as image-based identification and automation can further speed up the process. We present a proof of concept for image data recognition of a parasitic wasp family, the Diapriidae (Hymenoptera), obtained as part of the GBOL III project. These tiny (1.2-4.5mm) wasps were photographed and identified using DNA barcoding to provide a solid ground truth for training a neural network. Taxonomic identification was used down to the genus level. Subsequently, three different neural network architectures were trained, evaluated and optimised. As a result, 11 different genera of diaprids and one mixed group of 'other Hymenoptera' can be classified with an average accuracy of 96%. Additionally, the sex of the specimen can be classified automatically with an accuracy of >97%.</p>\",\"PeriodicalId\":54927,\"journal\":{\"name\":\"Invertebrate Systematics\",\"volume\":\"38 \",\"pages\":\"\"},\"PeriodicalIF\":1.8000,\"publicationDate\":\"2024-06-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Invertebrate Systematics\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://doi.org/10.1071/IS24011\",\"RegionNum\":2,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q3\",\"JCRName\":\"EVOLUTIONARY BIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Invertebrate Systematics","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1071/IS24011","RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"EVOLUTIONARY BIOLOGY","Score":null,"Total":0}
引用次数: 0

摘要

膜翅目昆虫的多样性和个体数量均居昆虫之首。其中许多物种可作为食物来源、害虫控制者和授粉者发挥关键作用。然而,人们对其多样性和生物学特性知之甚少,约 80% 的物种尚未被描述。基于形态学的经典分类法是一个相当缓慢的过程,但 DNA 条形码已经在鉴定方面取得了相当大的进展。基于图像的识别和自动化等创新方法可以进一步加快这一过程。我们介绍了在 GBOL III 项目中获得的寄生蜂科 Diapriidae(膜翅目)图像数据识别的概念验证。我们对这些微小(1.2-4.5 毫米)的黄蜂进行了拍照,并使用 DNA 条形码进行了识别,从而为训练神经网络提供了坚实的基础数据。分类鉴定使用到了属一级。随后,对三种不同的神经网络架构进行了训练、评估和优化。结果,可以对 11 个不同的双翅目属和一个 "其他膜翅目 "混合组进行分类,平均准确率为 96%。此外,标本性别的自动分类准确率大于 97%。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Image-based recognition of parasitoid wasps using advanced neural networks.

Hymenoptera has some of the highest diversity and number of individuals among insects. Many of these species potentially play key roles as food sources, pest controllers and pollinators. However, little is known about the diversity and biology and ~80% of the species have not yet been described. Classical taxonomy based on morphology is a rather slow process but DNA barcoding has already brought considerable progress in identification. Innovative methods such as image-based identification and automation can further speed up the process. We present a proof of concept for image data recognition of a parasitic wasp family, the Diapriidae (Hymenoptera), obtained as part of the GBOL III project. These tiny (1.2-4.5mm) wasps were photographed and identified using DNA barcoding to provide a solid ground truth for training a neural network. Taxonomic identification was used down to the genus level. Subsequently, three different neural network architectures were trained, evaluated and optimised. As a result, 11 different genera of diaprids and one mixed group of 'other Hymenoptera' can be classified with an average accuracy of 96%. Additionally, the sex of the specimen can be classified automatically with an accuracy of >97%.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Invertebrate Systematics
Invertebrate Systematics 生物-动物学
CiteScore
4.30
自引率
9.10%
发文量
35
审稿时长
>12 weeks
期刊介绍: Invertebrate Systematics (formerly known as Invertebrate Taxonomy) is an international journal publishing original and significant contributions on the systematics, phylogeny and biogeography of all invertebrate taxa. Articles in the journal provide comprehensive treatments of clearly defined taxonomic groups, often emphasising their biodiversity patterns and/or biological aspects. The journal also includes contributions on the systematics of selected species that are of particular conservation, economic, medical or veterinary importance. Invertebrate Systematics is a vital resource globally for scientists, students, conservation biologists, environmental consultants and government policy advisors who are interested in terrestrial, freshwater and marine systems. Invertebrate Systematics is published with the endorsement of the Commonwealth Scientific and Industrial Research Organisation (CSIRO) and the Australian Academy of Science.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信