{"title":"利用显微镜获取的图像进行低成本组织病理学有丝分裂检测","authors":"Bilal Shabbir, Saira Saleem, Iffat Aleem, Nida Babar, Hammad Farooq, Asif Loya, Hammad Naveed","doi":"","DOIUrl":null,"url":null,"abstract":"<p><p>Cancer outcomes are poor in resource-limited countries owing to high costs and insufficient pathologist-population ratio. The advent of digital pathology has assisted in improving cancer outcomes, however, Whole Slide Image scanners are expensive and not affordable in low-income countries. Microscope-acquired images on the other hand are cheap to collect and can be more viable for automation of cancer detection. In this study, we propose LCH-Network, a novel method to identify the cancer mitotic count from microscope-acquired images. We introduced Label Mix, and also synthesized images using GANs to handle data imbalance. Moreover, we applied progressive resolution to handle different image scales for mitotic localization. We achieved F1-Score of 0.71 and outperformed other existing techniques. Our findings enable mitotic count estimation from microscopic images with a low-cost setup. Clinically, our method could help avoid presumptive treatment without a confirmed cancer diagnosis.</p>","PeriodicalId":72181,"journal":{"name":"AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science","volume":"2024 ","pages":"409-418"},"PeriodicalIF":0.0000,"publicationDate":"2024-05-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11141803/pdf/","citationCount":"0","resultStr":"{\"title\":\"Low-Cost Histopathological Mitosis Detection for Microscope-acquired Images.\",\"authors\":\"Bilal Shabbir, Saira Saleem, Iffat Aleem, Nida Babar, Hammad Farooq, Asif Loya, Hammad Naveed\",\"doi\":\"\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>Cancer outcomes are poor in resource-limited countries owing to high costs and insufficient pathologist-population ratio. The advent of digital pathology has assisted in improving cancer outcomes, however, Whole Slide Image scanners are expensive and not affordable in low-income countries. Microscope-acquired images on the other hand are cheap to collect and can be more viable for automation of cancer detection. In this study, we propose LCH-Network, a novel method to identify the cancer mitotic count from microscope-acquired images. We introduced Label Mix, and also synthesized images using GANs to handle data imbalance. Moreover, we applied progressive resolution to handle different image scales for mitotic localization. We achieved F1-Score of 0.71 and outperformed other existing techniques. Our findings enable mitotic count estimation from microscopic images with a low-cost setup. Clinically, our method could help avoid presumptive treatment without a confirmed cancer diagnosis.</p>\",\"PeriodicalId\":72181,\"journal\":{\"name\":\"AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science\",\"volume\":\"2024 \",\"pages\":\"409-418\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2024-05-31\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11141803/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2024/1/1 0:00:00\",\"PubModel\":\"eCollection\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science","FirstCategoryId":"1085","ListUrlMain":"","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2024/1/1 0:00:00","PubModel":"eCollection","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0
摘要
在资源有限的国家,由于成本高昂和病理学家与人口比例不足,癌症治疗效果不佳。数字病理学的出现有助于改善癌症治疗效果,但是全切片图像扫描仪价格昂贵,低收入国家负担不起。另一方面,显微镜获取的图像收集成本低廉,可用于癌症的自动化检测。在这项研究中,我们提出了一种从显微镜获取的图像中识别癌症有丝分裂计数的新方法--LCH-Network。我们引入了标签混合(Label Mix)技术,并使用 GANs 合成图像以处理数据不平衡问题。此外,我们还采用了渐进式分辨率来处理不同比例的有丝分裂定位图像。我们的 F1 分数达到了 0.71,优于其他现有技术。我们的研究结果使有丝分裂计数的估算能够以低成本的设置从显微图像中进行。在临床上,我们的方法有助于避免在未确诊癌症的情况下进行推测性治疗。
Low-Cost Histopathological Mitosis Detection for Microscope-acquired Images.
Cancer outcomes are poor in resource-limited countries owing to high costs and insufficient pathologist-population ratio. The advent of digital pathology has assisted in improving cancer outcomes, however, Whole Slide Image scanners are expensive and not affordable in low-income countries. Microscope-acquired images on the other hand are cheap to collect and can be more viable for automation of cancer detection. In this study, we propose LCH-Network, a novel method to identify the cancer mitotic count from microscope-acquired images. We introduced Label Mix, and also synthesized images using GANs to handle data imbalance. Moreover, we applied progressive resolution to handle different image scales for mitotic localization. We achieved F1-Score of 0.71 and outperformed other existing techniques. Our findings enable mitotic count estimation from microscopic images with a low-cost setup. Clinically, our method could help avoid presumptive treatment without a confirmed cancer diagnosis.