小鼠酮六磷酸酶同工酶 C 的迈克尔斯样复合物

IF 2.6 4区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS
William C Gasper, Sarah Gardner, Adam Ross, Sarah A Oppelt, Karen N Allen, Dean R Tolan
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引用次数: 0

摘要

过去四十年来,与果糖有关的疾病急剧增加,包括肥胖症、心脏病和糖尿病。酮合酶(KHK)是肝脏果糖分解途径中的第一种酶,它催化果糖在 ATP 依赖性磷酸化作用下转化为 1-磷酸果糖。了解 KHK 在疾病相关过程中的作用对于管理和预防这种日益流行的疾病至关重要。设计治疗性抑制配体需要从分子角度深入了解 KHK 与配体结合和催化的结构-功能关系。酮六激酶有两种异构体:酮六激酶 A(KHK-A)在低水平下普遍产生,而酮六激酶 C(KHK-C)的水平要高得多,特别是在肝脏、肾脏和肠道中。目前已知未加载和加载的人类异构体 KHK-A 和 KHK-C 的结构,以及未加载和抑制剂结合的小鼠 KHK-C (mKHK-C)的结构,后者与人类 KHK-C 有 90% 的序列相同性。本文展示了 mKHK-C 的高分辨率 X 射线晶体结构,其分辨率为 1.79 Å。该结构是在与底物果糖和催化产物 ADP 的复合物中测定的,为小鼠直向同源物的 Michaelis 样复合物提供了一个视角。与无连接结构的比较表明,KHK 在与底物结合时发生了构象变化,使酶处于一种具有催化能力的形式,其中一个亚基的 β 片状结构域旋转了 16.2°,成为对侧活性位点的盖子。计算出的小鼠和人类酶的动力学参数相似,表明小鼠可能是研究果糖相关疾病的合适动物模型。了解小鼠和人类酶的相似性对于理解临床前针对这种酶的研究工作非常重要,这种类似于地面状态的迈克尔斯复合物表明构象变化在 KHK-C 的催化功能中起了作用。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Michaelis-like complex of mouse ketohexokinase isoform C.

Over the past forty years there has been a drastic increase in fructose-related diseases, including obesity, heart disease and diabetes. Ketohexokinase (KHK), the first enzyme in the liver fructolysis pathway, catalyzes the ATP-dependent phosphorylation of fructose to fructose 1-phosphate. Understanding the role of KHK in disease-related processes is crucial for the management and prevention of this growing epidemic. Molecular insight into the structure-function relationship in ligand binding and catalysis by KHK is needed for the design of therapeutic inhibitory ligands. Ketohexokinase has two isoforms: ketohexokinase A (KHK-A) is produced ubiquitously at low levels, whereas ketohexokinase C (KHK-C) is found at much higher levels, specifically in the liver, kidneys and intestines. Structures of the unliganded and liganded human isoforms KHK-A and KHK-C are known, as well as structures of unliganded and inhibitor-bound mouse KHK-C (mKHK-C), which shares 90% sequence identity with human KHK-C. Here, a high-resolution X-ray crystal structure of mKHK-C refined to 1.79 Å resolution is presented. The structure was determined in a complex with both the substrate fructose and the product of catalysis, ADP, providing a view of the Michaelis-like complex of the mouse ortholog. Comparison to unliganded structures suggests that KHK undergoes a conformational change upon binding of substrates that places the enzyme in a catalytically competent form in which the β-sheet domain from one subunit rotates by 16.2°, acting as a lid for the opposing active site. Similar kinetic parameters were calculated for the mouse and human enzymes and indicate that mice may be a suitable animal model for the study of fructose-related diseases. Knowledge of the similarity between the mouse and human enzymes is important for understanding preclinical efforts towards targeting this enzyme, and this ground-state, Michaelis-like complex suggests that a conformational change plays a role in the catalytic function of KHK-C.

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来源期刊
Acta Crystallographica. Section D, Structural Biology
Acta Crystallographica. Section D, Structural Biology BIOCHEMICAL RESEARCH METHODSBIOCHEMISTRY &-BIOCHEMISTRY & MOLECULAR BIOLOGY
CiteScore
4.50
自引率
13.60%
发文量
216
期刊介绍: Acta Crystallographica Section D welcomes the submission of articles covering any aspect of structural biology, with a particular emphasis on the structures of biological macromolecules or the methods used to determine them. Reports on new structures of biological importance may address the smallest macromolecules to the largest complex molecular machines. These structures may have been determined using any structural biology technique including crystallography, NMR, cryoEM and/or other techniques. The key criterion is that such articles must present significant new insights into biological, chemical or medical sciences. The inclusion of complementary data that support the conclusions drawn from the structural studies (such as binding studies, mass spectrometry, enzyme assays, or analysis of mutants or other modified forms of biological macromolecule) is encouraged. Methods articles may include new approaches to any aspect of biological structure determination or structure analysis but will only be accepted where they focus on new methods that are demonstrated to be of general applicability and importance to structural biology. Articles describing particularly difficult problems in structural biology are also welcomed, if the analysis would provide useful insights to others facing similar problems.
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