K. Narayanankutty, J. A. Pereiro-Morejon, A. Ferrero, V. Onesto, S. Forciniti, L. L. del Mercato, R. Mulet, A. De Martino, D. S. Tourigny, D. De Martino
{"title":"空间分布式多细胞代谢网络中的新兴行为和相变","authors":"K. Narayanankutty, J. A. Pereiro-Morejon, A. Ferrero, V. Onesto, S. Forciniti, L. L. del Mercato, R. Mulet, A. De Martino, D. S. Tourigny, D. De Martino","doi":"arxiv-2405.13424","DOIUrl":null,"url":null,"abstract":"Overflow metabolism is a ubiquitous phenomenon whereby cells in aerobic\nconditions excrete byproducts of glycolysis, such as lactate or acetate, into\nthe medium in a seemingly wasteful and polluting fashion. Whilst overflow may\nconfer microbes a fitness advantage by allowing them to overcome a finite\noxidative capacity, its occurrence in higher organisms is harder to assess.\nImportant insight was however obtained in recent experiments conducted at\nsingle-cell resolution, which revealed that accumulation of overflow products\nin tumor cell cultures known as the Warburg effect arises from imbalances in\nthe dynamic and heterogeneous inter-cellular exchange network through which\ncells collectively regulate the microenvironment. Here we provide a\nquantitative characterization of this scenario by integrating metabolic network\nmodeling with diffusion constraints, statistical physics theory and single-cell\nexperimental flux data. On the theoretical side, we clarify how\ndiffusion-limited exchanges shape the space of viable metabolic states of a\nmulti-cellular system. Specifically, a phase transition from a balanced network\nof exchanges to an unbalanced overflow regime occurs as the mean cellular\nglucose and oxygen uptakes vary while single-cell metabolic phenotypes are\nhighly heterogeneous around this transition. We then show that time-resolved\ndata from human tumor-stroma cell co-cultures consistently map to this\ncrossover region, supporting the idea that environmental deterioration reflects\na failure of coordination among recurrently interacting cells. In summary, our\nfindings suggest that, rather than deriving from multiple independent\ncell-autonomous processes, environmental control is an emergent feature of\nmulti-cellular systems.","PeriodicalId":501321,"journal":{"name":"arXiv - QuanBio - Cell Behavior","volume":"15 1","pages":""},"PeriodicalIF":0.0000,"publicationDate":"2024-05-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Emergent behaviour and phase transitions in spatially distributed multi-cellular metabolic networks\",\"authors\":\"K. Narayanankutty, J. A. Pereiro-Morejon, A. Ferrero, V. Onesto, S. Forciniti, L. L. del Mercato, R. Mulet, A. De Martino, D. S. Tourigny, D. De Martino\",\"doi\":\"arxiv-2405.13424\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"Overflow metabolism is a ubiquitous phenomenon whereby cells in aerobic\\nconditions excrete byproducts of glycolysis, such as lactate or acetate, into\\nthe medium in a seemingly wasteful and polluting fashion. Whilst overflow may\\nconfer microbes a fitness advantage by allowing them to overcome a finite\\noxidative capacity, its occurrence in higher organisms is harder to assess.\\nImportant insight was however obtained in recent experiments conducted at\\nsingle-cell resolution, which revealed that accumulation of overflow products\\nin tumor cell cultures known as the Warburg effect arises from imbalances in\\nthe dynamic and heterogeneous inter-cellular exchange network through which\\ncells collectively regulate the microenvironment. Here we provide a\\nquantitative characterization of this scenario by integrating metabolic network\\nmodeling with diffusion constraints, statistical physics theory and single-cell\\nexperimental flux data. On the theoretical side, we clarify how\\ndiffusion-limited exchanges shape the space of viable metabolic states of a\\nmulti-cellular system. Specifically, a phase transition from a balanced network\\nof exchanges to an unbalanced overflow regime occurs as the mean cellular\\nglucose and oxygen uptakes vary while single-cell metabolic phenotypes are\\nhighly heterogeneous around this transition. We then show that time-resolved\\ndata from human tumor-stroma cell co-cultures consistently map to this\\ncrossover region, supporting the idea that environmental deterioration reflects\\na failure of coordination among recurrently interacting cells. In summary, our\\nfindings suggest that, rather than deriving from multiple independent\\ncell-autonomous processes, environmental control is an emergent feature of\\nmulti-cellular systems.\",\"PeriodicalId\":501321,\"journal\":{\"name\":\"arXiv - QuanBio - Cell Behavior\",\"volume\":\"15 1\",\"pages\":\"\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2024-05-22\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"arXiv - QuanBio - Cell Behavior\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/arxiv-2405.13424\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"arXiv - QuanBio - Cell Behavior","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/arxiv-2405.13424","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
Emergent behaviour and phase transitions in spatially distributed multi-cellular metabolic networks
Overflow metabolism is a ubiquitous phenomenon whereby cells in aerobic
conditions excrete byproducts of glycolysis, such as lactate or acetate, into
the medium in a seemingly wasteful and polluting fashion. Whilst overflow may
confer microbes a fitness advantage by allowing them to overcome a finite
oxidative capacity, its occurrence in higher organisms is harder to assess.
Important insight was however obtained in recent experiments conducted at
single-cell resolution, which revealed that accumulation of overflow products
in tumor cell cultures known as the Warburg effect arises from imbalances in
the dynamic and heterogeneous inter-cellular exchange network through which
cells collectively regulate the microenvironment. Here we provide a
quantitative characterization of this scenario by integrating metabolic network
modeling with diffusion constraints, statistical physics theory and single-cell
experimental flux data. On the theoretical side, we clarify how
diffusion-limited exchanges shape the space of viable metabolic states of a
multi-cellular system. Specifically, a phase transition from a balanced network
of exchanges to an unbalanced overflow regime occurs as the mean cellular
glucose and oxygen uptakes vary while single-cell metabolic phenotypes are
highly heterogeneous around this transition. We then show that time-resolved
data from human tumor-stroma cell co-cultures consistently map to this
crossover region, supporting the idea that environmental deterioration reflects
a failure of coordination among recurrently interacting cells. In summary, our
findings suggest that, rather than deriving from multiple independent
cell-autonomous processes, environmental control is an emergent feature of
multi-cellular systems.