空间分布式多细胞代谢网络中的新兴行为和相变

K. Narayanankutty, J. A. Pereiro-Morejon, A. Ferrero, V. Onesto, S. Forciniti, L. L. del Mercato, R. Mulet, A. De Martino, D. S. Tourigny, D. De Martino
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引用次数: 0

摘要

溢出代谢是一种普遍存在的现象,在有氧条件下,细胞以一种看似浪费和污染的方式将糖酵解的副产物(如乳酸盐或醋酸盐)排泄到培养基中。然而,最近在单细胞分辨率下进行的实验获得了重要启示,该实验揭示了肿瘤细胞培养物中溢出产物的积累(即沃伯格效应)源于动态和异质细胞间交换网络的失衡,细胞通过该网络共同调节微环境。在这里,我们将新陈代谢网络模型与扩散约束、统计物理学理论和单个细胞群实验通量数据相结合,对这种情况进行了定性分析。在理论方面,我们阐明了扩散受限的交换如何塑造多细胞系统的可行代谢状态空间。具体来说,随着平均细胞葡萄糖和氧气摄入量的变化,会出现从平衡交换网络到不平衡溢流机制的相变,而在这一转变过程中,单细胞代谢表型具有高度异质性。我们随后表明,来自人类肿瘤-间质细胞共培养物的时间分辨数据始终映射到这一交叉区域,支持了环境恶化反映了反复相互作用的细胞之间协调失败的观点。总之,我们的研究结果表明,环境控制不是来自多个独立的细胞自主过程,而是多细胞系统的一个新兴特征。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Emergent behaviour and phase transitions in spatially distributed multi-cellular metabolic networks
Overflow metabolism is a ubiquitous phenomenon whereby cells in aerobic conditions excrete byproducts of glycolysis, such as lactate or acetate, into the medium in a seemingly wasteful and polluting fashion. Whilst overflow may confer microbes a fitness advantage by allowing them to overcome a finite oxidative capacity, its occurrence in higher organisms is harder to assess. Important insight was however obtained in recent experiments conducted at single-cell resolution, which revealed that accumulation of overflow products in tumor cell cultures known as the Warburg effect arises from imbalances in the dynamic and heterogeneous inter-cellular exchange network through which cells collectively regulate the microenvironment. Here we provide a quantitative characterization of this scenario by integrating metabolic network modeling with diffusion constraints, statistical physics theory and single-cell experimental flux data. On the theoretical side, we clarify how diffusion-limited exchanges shape the space of viable metabolic states of a multi-cellular system. Specifically, a phase transition from a balanced network of exchanges to an unbalanced overflow regime occurs as the mean cellular glucose and oxygen uptakes vary while single-cell metabolic phenotypes are highly heterogeneous around this transition. We then show that time-resolved data from human tumor-stroma cell co-cultures consistently map to this crossover region, supporting the idea that environmental deterioration reflects a failure of coordination among recurrently interacting cells. In summary, our findings suggest that, rather than deriving from multiple independent cell-autonomous processes, environmental control is an emergent feature of multi-cellular systems.
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