用数据驱动方法和确定性模型探索猴痘传播动态

Haridas K. Das
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摘要

痘(原猴痘)是一种传染病,主要通过直接接触受感染的动物或人的血液、体液或皮肤或粘膜病变而传播。鉴于 2022-2023 年发生的全球疫情,我们在本文中分析了全球猴痘单变量时间序列数据,并对包括美国、巴西和三大洲在内的全球疫情进行了全面分析:北美、南美和欧洲。这项研究的新颖之处在于,它通过同时实施数据驱动方法和数学模型,深入研究了天花时间序列数据--这是现有文献通常没有涉及的方面。我们提出了一个传统的分区模型,还在 Mpox 数据上实施了深度学习模型(一维卷积神经网络(CNN)、长短期记忆(LSTM)、双向 LSTM(BiLSTM)、混合 CNN-LSTM 和 CNN-BiLSTM)以及统计时间序列模型:自回归综合移动平均(ARIMA)和指数平滑。确定性模型的主要发现是疫苗接种率可使感染动态曲线趋于平缓,并影响基本繁殖数量。通过数值模拟,我们确定在易感人群中增加疫苗接种是控制疾病传播的关键。此外,在疫情爆发时,我们的模型显示了通过调整关键流行病学参数(即基线接触率和人群中的接触者比例)来控制疫情的潜力。接下来,我们分析了有助于全面了解不同地区疾病动态的数据驱动模型。此外,我们还对模型进行了训练,以提供不同地理位置的短期(八周)预测,所有八个模型都得出了可靠的结果。这项研究利用了一个综合框架来研究单变量时间序列数据,以了解天花传播的动态。预测结果表明,截至 2023 年 7 月 29 日,天花已处于消亡状态。此外,确定性模型显示了接种麻痘疫苗在缓解麻痘传播方面的重要性,并强调了在疫情爆发期间有效调整关键流行病学参数,特别是高危人群接触率的重要性。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Exploring the dynamics of monkeypox transmission with data-driven methods and a deterministic model
Mpox (formerly monkeypox) is an infectious disease that spreads mostly through direct contact with infected animals or people's blood, bodily fluids, or cutaneous or mucosal lesions. In light of the global outbreak that occurred in 2022–2023, in this paper, we analyzed global Mpox univariate time series data and provided a comprehensive analysis of disease outbreaks across the world, including the USA with Brazil and three continents: North America, South America, and Europe. The novelty of this study is that it delved into the Mpox time series data by implementing the data-driven methods and a mathematical model concurrently—an aspect not typically addressed in the existing literature. The study is also important because implementing these models concurrently improved our predictions' reliability for infectious diseases.We proposed a traditional compartmental model and also implemented deep learning models (1D- convolutional neural network (CNN), long-short term memory (LSTM), bidirectional LSTM (BiLSTM), hybrid CNN-LSTM, and CNN-BiLSTM) as well as statistical time series models: autoregressive integrated moving average (ARIMA) and exponential smoothing on the Mpox data. We also employed the least squares method fitting to estimate the essential epidemiological parameters in the proposed deterministic model.The primary finding of the deterministic model is that vaccination rates can flatten the curve of infected dynamics and influence the basic reproduction number. Through the numerical simulations, we determined that increased vaccination among the susceptible human population is crucial to control disease transmission. Moreover, in case of an outbreak, our model showed the potential for epidemic control by adjusting the key epidemiological parameters, namely the baseline contact rate and the proportion of contacts within the human population. Next, we analyzed data-driven models that contribute to a comprehensive understanding of disease dynamics in different locations. Additionally, we trained models to provide short-term (eight-week) predictions across various geographical locations, and all eight models produced reliable results.This study utilized a comprehensive framework to investigate univariate time series data to understand the dynamics of Mpox transmission. The prediction showed that Mpox is in its die-out situation as of July 29, 2023. Moreover, the deterministic model showed the importance of the Mpox vaccination in mitigating the Mpox transmission and highlighted the significance of effectively adjusting key epidemiological parameters during outbreaks, particularly the contact rate in high-risk groups.
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