Chin Hong Ng, Kevin Kit Siong Ng, Soon Leong Lee, Nur Nabilah Alias, Hazwani Humaira’ Zakaria, Lee Hong Tnah, Chai Ting Lee, Nurul-Farhanah Zakaria, Khairunnisa M. Mamat
{"title":"山地双子叶植物 Rubroshorea curtisii 的遗传多样性和种群结构:对保护的影响","authors":"Chin Hong Ng, Kevin Kit Siong Ng, Soon Leong Lee, Nur Nabilah Alias, Hazwani Humaira’ Zakaria, Lee Hong Tnah, Chai Ting Lee, Nurul-Farhanah Zakaria, Khairunnisa M. Mamat","doi":"10.1007/s11295-024-01649-7","DOIUrl":null,"url":null,"abstract":"<p>Forests help to reduce global warming by capturing and storing atmospheric carbon. Understanding the genetics of keystone species at a population level is vital for the management and sustainable utilization of forest genetic resources. A comprehensive population genetics study was carried out on <i>Rubroshorea curtisii</i>, an important widespread hill dipterocarp species in Peninsular Malaysia. A total of 41 populations across its distribution range in Peninsular Malaysia were collected to elucidate the genetic diversity and ultimately provide management guidelines for this species. The population samples were analysed using 10 polymorphic microsatellite loci and sequenced with three chloroplast DNA (cpDNA) regions. A total of 145 alleles were derived from the microsatellite loci, and 21 haplotypes were identified based on 1,113 bp of concatenated cpDNA sequences. The populations showed moderately high genetic diversity (mean <i>H</i><sub>E</sub> = 0.627 for microsatellite gene diversity and <i>H</i><sub>T</sub> = 0.574 for average haplotype diversity) but low genetic differentiation (<i>F</i><sub>ST</sub> = 0.036). Using Bayesian clustering, the studied populations can be divided into two groups, one of which shows further substructuring. Further sub-structuring in Cluster 1 led to sub-clustering of 1a and 1b. Bottleneck analysis did not detect any recent bottleneck events. Based on our findings, priority areas for <i>in situ</i> and <i>ex situ</i> conservation and minimum population size are recommended for the sustainable utilization of <i>R. curtisii</i>.</p>","PeriodicalId":23335,"journal":{"name":"Tree Genetics & Genomes","volume":"55 1","pages":""},"PeriodicalIF":1.9000,"publicationDate":"2024-05-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Genetic diversity and population structure of Rubroshorea curtisii, a hill dipterocarp species: implications for conservation\",\"authors\":\"Chin Hong Ng, Kevin Kit Siong Ng, Soon Leong Lee, Nur Nabilah Alias, Hazwani Humaira’ Zakaria, Lee Hong Tnah, Chai Ting Lee, Nurul-Farhanah Zakaria, Khairunnisa M. Mamat\",\"doi\":\"10.1007/s11295-024-01649-7\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p>Forests help to reduce global warming by capturing and storing atmospheric carbon. Understanding the genetics of keystone species at a population level is vital for the management and sustainable utilization of forest genetic resources. A comprehensive population genetics study was carried out on <i>Rubroshorea curtisii</i>, an important widespread hill dipterocarp species in Peninsular Malaysia. A total of 41 populations across its distribution range in Peninsular Malaysia were collected to elucidate the genetic diversity and ultimately provide management guidelines for this species. The population samples were analysed using 10 polymorphic microsatellite loci and sequenced with three chloroplast DNA (cpDNA) regions. A total of 145 alleles were derived from the microsatellite loci, and 21 haplotypes were identified based on 1,113 bp of concatenated cpDNA sequences. The populations showed moderately high genetic diversity (mean <i>H</i><sub>E</sub> = 0.627 for microsatellite gene diversity and <i>H</i><sub>T</sub> = 0.574 for average haplotype diversity) but low genetic differentiation (<i>F</i><sub>ST</sub> = 0.036). Using Bayesian clustering, the studied populations can be divided into two groups, one of which shows further substructuring. Further sub-structuring in Cluster 1 led to sub-clustering of 1a and 1b. Bottleneck analysis did not detect any recent bottleneck events. Based on our findings, priority areas for <i>in situ</i> and <i>ex situ</i> conservation and minimum population size are recommended for the sustainable utilization of <i>R. curtisii</i>.</p>\",\"PeriodicalId\":23335,\"journal\":{\"name\":\"Tree Genetics & Genomes\",\"volume\":\"55 1\",\"pages\":\"\"},\"PeriodicalIF\":1.9000,\"publicationDate\":\"2024-05-15\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Tree Genetics & Genomes\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://doi.org/10.1007/s11295-024-01649-7\",\"RegionNum\":3,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"FORESTRY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Tree Genetics & Genomes","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1007/s11295-024-01649-7","RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"FORESTRY","Score":null,"Total":0}
Genetic diversity and population structure of Rubroshorea curtisii, a hill dipterocarp species: implications for conservation
Forests help to reduce global warming by capturing and storing atmospheric carbon. Understanding the genetics of keystone species at a population level is vital for the management and sustainable utilization of forest genetic resources. A comprehensive population genetics study was carried out on Rubroshorea curtisii, an important widespread hill dipterocarp species in Peninsular Malaysia. A total of 41 populations across its distribution range in Peninsular Malaysia were collected to elucidate the genetic diversity and ultimately provide management guidelines for this species. The population samples were analysed using 10 polymorphic microsatellite loci and sequenced with three chloroplast DNA (cpDNA) regions. A total of 145 alleles were derived from the microsatellite loci, and 21 haplotypes were identified based on 1,113 bp of concatenated cpDNA sequences. The populations showed moderately high genetic diversity (mean HE = 0.627 for microsatellite gene diversity and HT = 0.574 for average haplotype diversity) but low genetic differentiation (FST = 0.036). Using Bayesian clustering, the studied populations can be divided into two groups, one of which shows further substructuring. Further sub-structuring in Cluster 1 led to sub-clustering of 1a and 1b. Bottleneck analysis did not detect any recent bottleneck events. Based on our findings, priority areas for in situ and ex situ conservation and minimum population size are recommended for the sustainable utilization of R. curtisii.
期刊介绍:
Tree Genetics and Genomes is an international, peer-reviewed journal, which provides for the rapid publication of high quality papers covering the areas of forest and horticultural tree genetics and genomics.
Topics covered in this journal include:
Structural, functional and comparative genomics
Evolutionary, population and quantitative genetics
Ecological and physiological genetics
Molecular, cellular and developmental genetics
Conservation and restoration genetics
Breeding and germplasm development
Bioinformatics and databases
Tree Genetics and Genomes publishes four types of papers:
(1) Original Paper
(2) Review
(3) Opinion Paper
(4) Short Communication.