Matthias Zeller , Stephan Parent , Nate Schultheiss , W. T. A. Harrison (Editor)
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Along with the redetermination to modern standards and unambiguous location of the acidic H atom and variable-temperature single-crystal unit-cell determinations for Form I, the Form II polymorph of the title compound, which crystallizes in the monoclinic space group <em>P</em>2<sub>1</sub>/<em>n</em>, is described for the first time. The psilocin molecules are present in both forms in their phenol–amine tautomeric forms (not resolved in the 1974 report). The molecules in Forms I and II, however, feature different conformations of their <em>N</em>,<em>N</em>-dimethyl ethylene substituent, with the N—C—C—C link in Form I being <em>trans</em> and in Form II being <em>gauche</em>, allowing the latter to bend back to the hydroxyl group of the same molecule, leading to the formation of a strong intramolecular O—H⋯N hydrogen bond between the hydroxyl moiety and ethylamino-nitrogen group. In the extended structure of Form II, the molecules form one-dimensional strands through N—H⋯O hydrogen bonds from the indole group to the oxygen atom of the hydroxyl moiety of an adjacent molecule. Form II exhibits whole-molecule disorder due to a pseudo-mirror operation, with an occupancy ratio of 0.689 (5):0.311 (5) for the two components. In contrast, Form I does not feature intramolecular hydrogen bonds but forms a layered structure through intermolecular N—H⋯O and O—H⋯N hydrogen bonds.</p></div>","PeriodicalId":7367,"journal":{"name":"Acta Crystallographica Section E: Crystallographic Communications","volume":"80 6","pages":"Pages 590-595"},"PeriodicalIF":0.5000,"publicationDate":"2024-05-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Structural characterization and comparative analysis of polymorphic forms of psilocin (4-hydroxy-N,N-dimethyltryptamine)\",\"authors\":\"Matthias Zeller , Stephan Parent , Nate Schultheiss , W. T. A. Harrison (Editor)\",\"doi\":\"10.1107/S2056989024004201\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><p>This study presents two anhydrous polymorphic forms of psilocin, detailing their crystal structures and hydrogen-bonding differences, with Form II introducing a novel conformation and whole-molecule disorder.</p></div><div><p>The title compound, C<sub>12</sub>H<sub>16</sub>N<sub>2</sub>O, is a hydroxy-substituted monoamine alkaloid, and the primary metabolite of the naturally occurring psychedelic compound psilocybin. Crystalline forms of psilocin are known, but their characterization by single-crystal structure analysis is limited. Herein, two anhydrous polymorphic forms (I and II) of psilocin are described. The crystal structure of polymorphic Form I, in space group <em>P</em>2<sub>1</sub>/<em>c</em>, was first reported in 1974. Along with the redetermination to modern standards and unambiguous location of the acidic H atom and variable-temperature single-crystal unit-cell determinations for Form I, the Form II polymorph of the title compound, which crystallizes in the monoclinic space group <em>P</em>2<sub>1</sub>/<em>n</em>, is described for the first time. The psilocin molecules are present in both forms in their phenol–amine tautomeric forms (not resolved in the 1974 report). The molecules in Forms I and II, however, feature different conformations of their <em>N</em>,<em>N</em>-dimethyl ethylene substituent, with the N—C—C—C link in Form I being <em>trans</em> and in Form II being <em>gauche</em>, allowing the latter to bend back to the hydroxyl group of the same molecule, leading to the formation of a strong intramolecular O—H⋯N hydrogen bond between the hydroxyl moiety and ethylamino-nitrogen group. In the extended structure of Form II, the molecules form one-dimensional strands through N—H⋯O hydrogen bonds from the indole group to the oxygen atom of the hydroxyl moiety of an adjacent molecule. Form II exhibits whole-molecule disorder due to a pseudo-mirror operation, with an occupancy ratio of 0.689 (5):0.311 (5) for the two components. 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引用次数: 0
摘要
标题化合物 C12H16N2O 是一种羟基取代的单胺生物碱,也是天然迷幻化合物迷幻素的主要代谢产物。目前已知的迷幻素结晶形式不多,但通过单晶结构分析对其进行表征的方法却很有限。本文介绍了两种无水多晶型(I 型和 II 型)的迷幻素。空间群为 P21/c 的多晶体形式 I 的晶体结构于 1974 年首次报道。在按照现代标准重新确定酸性 H 原子的明确位置并对形式 I 进行变温单晶单位晶胞测定的同时,还首次描述了标题化合物的形式 II 多晶体(在单斜空间群 P21/n 中结晶)。这两种形态中都存在苯酚-胺同分异构体形式的茜洛辛分子(1974 年的报告中未对其进行解析)。不过,形式 I 和形式 II 中的分子的 N,N-二甲基乙烯取代基具有不同的构象,形式 I 中的 N-C-C-C 链接是反式的,而形式 II 中的 N-C-C-C 链接是高位的,这使得后者可以弯曲回到同一分子的羟基上,从而在羟基和乙氨基氮基之间形成一个强大的分子内 O-H...N氢键。在形式 II 的扩展结构中,分子通过吲哚基与相邻分子羟基氧原子之间的 N-H...O 氢键形成一维链。由于伪镜操作,形式 II 显示出整个分子的无序性,两个组分的占位比为 0.689 (5):0.311 (5)。与此相反,形式 I 并不以分子内氢键为特征,而是通过分子间 N-H...O 和 O-H...N 氢键形成分层结构。
Structural characterization and comparative analysis of polymorphic forms of psilocin (4-hydroxy-N,N-dimethyltryptamine)
This study presents two anhydrous polymorphic forms of psilocin, detailing their crystal structures and hydrogen-bonding differences, with Form II introducing a novel conformation and whole-molecule disorder.
The title compound, C12H16N2O, is a hydroxy-substituted monoamine alkaloid, and the primary metabolite of the naturally occurring psychedelic compound psilocybin. Crystalline forms of psilocin are known, but their characterization by single-crystal structure analysis is limited. Herein, two anhydrous polymorphic forms (I and II) of psilocin are described. The crystal structure of polymorphic Form I, in space group P21/c, was first reported in 1974. Along with the redetermination to modern standards and unambiguous location of the acidic H atom and variable-temperature single-crystal unit-cell determinations for Form I, the Form II polymorph of the title compound, which crystallizes in the monoclinic space group P21/n, is described for the first time. The psilocin molecules are present in both forms in their phenol–amine tautomeric forms (not resolved in the 1974 report). The molecules in Forms I and II, however, feature different conformations of their N,N-dimethyl ethylene substituent, with the N—C—C—C link in Form I being trans and in Form II being gauche, allowing the latter to bend back to the hydroxyl group of the same molecule, leading to the formation of a strong intramolecular O—H⋯N hydrogen bond between the hydroxyl moiety and ethylamino-nitrogen group. In the extended structure of Form II, the molecules form one-dimensional strands through N—H⋯O hydrogen bonds from the indole group to the oxygen atom of the hydroxyl moiety of an adjacent molecule. Form II exhibits whole-molecule disorder due to a pseudo-mirror operation, with an occupancy ratio of 0.689 (5):0.311 (5) for the two components. In contrast, Form I does not feature intramolecular hydrogen bonds but forms a layered structure through intermolecular N—H⋯O and O—H⋯N hydrogen bonds.
期刊介绍:
Acta Crystallographica Section E: Crystallographic Communications is the IUCr''s open-access structural communications journal. It provides a fast, simple and easily accessible publication mechanism for crystal structure determinations of inorganic, metal-organic and organic compounds. The electronic submission, validation, refereeing and publication facilities of the journal ensure rapid and high-quality publication of fully validated structures. The primary article category is Research Communications; these are peer-reviewed articles describing one or more structure determinations with appropriate discussion of the science.