利用机器学习技术对生姜(Zingiber officinale)的抗乳腺癌活性进行室内预测。

Breast disease Pub Date : 2024-01-01 DOI:10.3233/BD-249002
Marisca Evalina Gondokesumo, Muhammad Rezki Rasyak
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引用次数: 0

摘要

简介印度尼西亚文明广泛使用传统医药来治疗疾病和保护健康。但人们对药用植物的安全性和功效缺乏了解,这仍是一个重大问题。虽然造成这种影响的确切化学物质尚不清楚,但生姜是东南亚常见的药用植物,可能具有抗癌功效:方法:利用来自 Dudedocking 的数据,创建了一个机器学习模型来预测生姜中可能存在的乳腺癌抗癌化学物质。该模型用于预测可阻断 KIT 和 MAPK2 蛋白的物质,而 KIT 和 MAPK2 蛋白是乳腺癌的基本要素:结果:根据分子对接研究,β-胡萝卜素、5-羟基-74'-二甲氧基黄酮、[12]-肖高醇、异姜黄酮 B、姜黄素、反式-[10]-肖高醇、姜黄酮 A、二氢姜黄素和去甲氧基姜黄素都优于 MAPK2 的参考配体。番茄红素、[8]-Shogaol、[6]-Shogaol 和 [1]-Paradol 显示出低毒性,没有违反 Lipinski 规定的情况,但 beta 胡萝卜素有毒性预测和违反 Lipinski 规定的情况。预计这三种物质都具有抗致癌性:总之,这项研究显示了机器学习在药物开发中的价值,并为生姜中可能存在的抗癌化学物质提供了具有洞察力的信息。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
In-silico prediction of anti-breast cancer activity of ginger (Zingiber officinale) using machine learning techniques.

Introduction: Indonesian civilization extensively uses traditional medicine to cure illnesses and preserve health. The lack of knowledge on the security and efficacy of medicinal plants is still a significant concern. Although the precise chemicals responsible for this impact are unknown, ginger is a common medicinal plant in Southeast Asia that may have anticancer qualities.

Method: Using data from Dudedocking, a machine-learning model was created to predict possible breast anticancer chemicals from ginger. The model was used to forecast substances that block KIT and MAPK2 proteins, essential elements in breast cancer.

Result: Beta-carotene, 5-Hydroxy-74'-dimethoxyflavone, [12]-Shogaol, Isogingerenone B, curcumin, Trans-[10]-Shogaol, Gingerenone A, Dihydrocurcumin, and demethoxycurcumin were all superior to the reference ligand for MAPK2, according to molecular docking studies. Lycopene, [8]-Shogaol, [6]-Shogaol, and [1]-Paradol exhibited low toxicity and no Lipinski violations, but beta carotene had toxic predictions and Lipinski violations. It was anticipated that all three substances would have anticarcinogenic qualities.

Conclusion: Overall, this study shows the value of machine learning in drug development and offers insightful information on possible anticancer chemicals from ginger.

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来源期刊
Breast disease
Breast disease Medicine-Oncology
CiteScore
1.80
自引率
0.00%
发文量
59
期刊介绍: The recent expansion of work in the field of breast cancer inevitably will hasten discoveries that will have impact on patient outcome. The breadth of this research that spans basic science, clinical medicine, epidemiology, and public policy poses difficulties for investigators. Not only is it necessary to be facile in comprehending ideas from many disciplines, but also important to understand the public implications of these discoveries. Breast Disease publishes review issues devoted to an in-depth analysis of the scientific and public implications of recent research on a specific problem in breast cancer. Thus, the reviews will not only discuss recent discoveries but will also reflect on their impact in breast cancer research or clinical management.
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