大豆(Glycine max L.)Dynamin 基因的鉴定和表达分析揭示了它们在植物发育和应激反应中的作用

IF 1.8 4区 生物学 Q2 PLANT SCIENCES
Xiangbo Duan, Yanang Xu, Ke Zhang, Zhouli Liu, Yang Yu
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引用次数: 0

摘要

动态蛋白和动态蛋白相关蛋白(Dynamin-related proteins,DRPs)是一种大型 GTP 酶,对细胞分裂、内吞和多种生物过程至关重要。然而,人们对大豆(Glycine max L.)这一重要豆科作物中 DRP 基因家族的了解仍然有限。本研究从大豆基因组中鉴定了 31 个 GmDRPs,并根据系统发育分析将其分为五组。我们观察到每个组都显示出特定的保守结构域分布和外显子-内含子结构。共线性分析表明,基因复制事件在很大程度上导致了 GmDRP 家族的扩展。根据功能注释,大豆动态蛋白以 GTP 依赖性方式参与细胞分裂、内吞和线粒体/过氧物酶体裂变。启动子分析表明,GmDRPs 在介导发育过程、植物激素信号转导和胁迫响应方面具有潜在作用。根据 RNA-seq 数据,发现一些 GmDRPs 在不同组织/器官中普遍表达,一些几乎不表达,而另一些则表现出明显的组织/器官偏好。表达分析还揭示了 GmDRPs 在冷和/或干旱胁迫响应中的参与。总之,我们对大豆动态蛋白家族进行了系统分析,我们的研究结果为进一步研究其功能作用奠定了基础。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Identification and Expression Analysis of Soybean (Glycine max L.) Dynamin Genes Reveal Their Involvements in Plant Development and Stress Response

Identification and Expression Analysis of Soybean (Glycine max L.) Dynamin Genes Reveal Their Involvements in Plant Development and Stress Response

Dynamin and dynamin-related proteins (DRPs) are large GTPases that are vital for cytokinesis, endocytosis and multiple biological processes. However, knowledge of the DRP gene family in soybean (Glycine max L.), an important leguminous crop plant, is still limited. In this study, 31 GmDRPs were identified from soybean genome, and were classified into five groups based on phylogenetic analysis. We observed that each group displayed specific conserved domain distribution and exon–intron structures. Collinearity analysis indicated that gene duplication events contribute largely to the expansion of GmDRP family. According to functional annotation, soybean dynamins were found implicated in cell division, endocytosis, and mitochondrion/peroxisome fission in GTP-dependent manner. Promoter analysis implied the potential roles of GmDRPs in mediating developmental processes, plant hormone signaling, and stress responses. Based on RNA-seq data, some of the GmDRPs were found ubiquitously expressed in various tissues/organs, some were barely expressed, while some showed obvious tissue/organ-preference. The expression analysis also revealed the involvement of GmDRPs in cold and/or drought stress response. In sum, we performed a systematic analysis of soybean dynamin family and our results provide a foundation for further researches on their functional roles.

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来源期刊
Tropical Plant Biology
Tropical Plant Biology PLANT SCIENCES-
CiteScore
3.70
自引率
0.00%
发文量
15
期刊介绍: Tropical Plant Biology covers the most rapidly advancing aspects of tropical plant biology including physiology, evolution, development, cellular and molecular biology, genetics, genomics, genomic ecology, and molecular breeding. It publishes articles of original research, but it also accepts review articles and publishes occasional special issues focused on a single tropical crop species or breakthrough. Information published in this journal guides effort to increase the productivity and quality of tropical plants and preserve the world’s plant diversity. The journal serves as the primary source of newly published information for researchers and professionals in all of the aforementioned areas of tropical science.
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