多糖磺基转移酶:推定序列的鉴定和各自的功能特征。

IF 5.6 2区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY
Ravina Mistry, Dominic P Byrne, David Starns, Igor L Barsukov, Edwin A Yates, David G Fernig
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引用次数: 0

摘要

硫酸化多糖的结构种类繁多,因此需要同样种类繁多的酶,即多糖硫转移酶(PST)。硫酸化多糖存在于包括藻类、真菌和古细菌在内的所有生物界,而它们的硫酸化途径相对来说尚未被探索。硫酸化多糖具有抗炎、抗凝血和抗癌特性,具有巨大的治疗潜力。目前,利用 Pfam 鉴定 PSTs 的工作主要集中在鉴定糖胺聚糖(GAG)磺基转移酶上,因为它们在细胞通讯、细胞外基质形成和凝血过程中发挥着关键作用。因此,我们对非 GAG PSTs 结构和功能的了解仍然有限。主要的磺基转移酶家族--Sulfotransfer_1 和 Sulfotransfer_2--显示出广泛的同源性,应能捕捉到各种各样的磺基转移酶,但在非 GAG PST 序列注释方面却很有限。此外,PST 的生化分析很少,也进一步限制了序列注释。现在已经有了高通量、稳健的磺基转移酶检测方法,如比色法 PAPS(3'-phosphoadenosine 5'-phosphosulfate,5'-磷酸腺苷)耦合检测、基于铕的荧光探针用于比色法 PAP(3'-phosphoadenosine-5'-phosphate,5'-磷酸腺苷)检测,以及核磁共振法用于活性和产物分析。这些技术提供了实时和直接的测量方法,可加强生命树中硫酸化多糖的功能注释和后续分析,从而改进推定的 PST 鉴定和功能表征。改进 PST 序列的注释和生化分析将提高 PST 在生物医学和生物技术领域的应用。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Polysaccharide sulfotransferases: the identification of putative sequences and respective functional characterisation.

The vast structural diversity of sulfated polysaccharides demands an equally diverse array of enzymes known as polysaccharide sulfotransferases (PSTs). PSTs are present across all kingdoms of life, including algae, fungi and archaea, and their sulfation pathways are relatively unexplored. Sulfated polysaccharides possess anti-inflammatory, anticoagulant and anti-cancer properties and have great therapeutic potential. Current identification of PSTs using Pfam has been predominantly focused on the identification of glycosaminoglycan (GAG) sulfotransferases because of their pivotal roles in cell communication, extracellular matrix formation and coagulation. As a result, our knowledge of non-GAG PSTs structure and function remains limited. The major sulfotransferase families, Sulfotransfer_1 and Sulfotransfer_2, display broad homology and should enable the capture of a wide assortment of sulfotransferases but are limited in non-GAG PST sequence annotation. In addition, sequence annotation is further restricted by the paucity of biochemical analyses of PSTs. There are now high-throughput and robust assays for sulfotransferases such as colorimetric PAPS (3'-phosphoadenosine 5'-phosphosulfate) coupled assays, Europium-based fluorescent probes for ratiometric PAP (3'-phosphoadenosine-5'-phosphate) detection, and NMR methods for activity and product analysis. These techniques provide real-time and direct measurements to enhance the functional annotation and subsequent analysis of sulfated polysaccharides across the tree of life to improve putative PST identification and characterisation of function. Improved annotation and biochemical analysis of PST sequences will enhance the utility of PSTs across biomedical and biotechnological sectors.

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来源期刊
Essays in biochemistry
Essays in biochemistry 生物-生化与分子生物学
CiteScore
10.50
自引率
0.00%
发文量
105
审稿时长
>12 weeks
期刊介绍: Essays in Biochemistry publishes short, digestible reviews from experts highlighting recent key topics in biochemistry and the molecular biosciences. Written to be accessible for those not yet immersed in the subject, each article is an up-to-date, self-contained summary of the topic. Bridging the gap between the latest research and established textbooks, Essays in Biochemistry will tell you what you need to know to begin exploring the field, as each article includes the top take-home messages as summary points. Each issue of the journal is guest edited by a key opinion leader in the area, and whether you are continuing your studies or moving into a new research area, the Journal gives a complete picture in one place. Essays in Biochemistry is proud to publish Understanding Biochemistry, an essential online resource for post-16 students, teachers and undergraduates. Providing up-to-date overviews of key concepts in biochemistry and the molecular biosciences, the Understanding Biochemistry issues of Essays in Biochemistry are published annually in October.
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