Khomaini Hasan, Umi Baroroh, Indri Novia Madhani, Zahra Silmi Muscifa, Mia Tria Novianti, Muhamad Abidin, Muhammad Yusuf, Toto Subroto
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The results demonstrated that ethanol and ether sustain Taka-amylase activity up to 20% to 25% of the organic solvents, with ether providing twice the stability of ethanol. Molecular dynamics simulations further revealed that Taka-amylase has a more stable structure in ether and ethanol relative to other organic solvents. In addition, the analysis showed that the loop located near the active site in the AB-domain is a vulnerable site for enzyme destabilization when exposed to organic solvents. The ability of Taka-amylase to preserve the secondary loop structure in ether and ethanol contributed to the enzyme's activity. 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引用次数: 0
摘要
有机溶剂的加入可调节酶促反应,从而改变酶的稳定性、活性和反应速率。这些溶剂可创造有利的微环境,从而促成疏水性反应、促进酶-底物复合物的形成,并减少不良的水依赖性副反应。然而,了解有机溶剂对酶活性的影响至关重要,因为它们也会导致酶失活。本研究通过实验和计算研究了黑曲霉α-淀粉酶(Taka-淀粉酶)在各种有机溶剂中的酶解性能。结果表明,乙醇和乙醚在 20% 至 25% 的有机溶剂中可维持 Taka 淀粉酶的活性,其中乙醚的稳定性是乙醇的两倍。分子动力学模拟进一步表明,相对于其他有机溶剂,Taka-淀粉酶在乙醚和乙醇中具有更稳定的结构。此外,分析表明,当暴露在有机溶剂中时,位于 AB 域活性位点附近的环路是酶失稳的易损位点。在乙醚和乙醇中,Taka-淀粉酶能够保持二级环结构,这有助于提高酶的活性。此外,Taka-淀粉酶与溶剂接触的表面积分布在所有酶结构中,因此导致了 Taka- 淀粉酶在大多数有机溶剂存在下的不稳定性。
Enzymatic Performance of Aspergillus oryzae α-Amylase in the Presence of Organic Solvents: Activity, Stability, and Bioinformatic Studies.
Enzymatic reactions can be modulated by the incorporation of organic solvents, leading to alterations in enzyme stability, activity, and reaction rates. These solvents create a favorable microenvironment that enables hydrophobic reactions, facilities enzyme-substrate complex formation, and reduces undesirable water-dependent side reactions. However, it is crucial to understand the impact of organic solvents on enzymatic activity, as they can also induce enzyme inactivation. In this study, the enzymatic performance of Aspergillus oryzae α-amylase (Taka-amylase) in various organic solvents both experimentally and computationally was investigated. The results demonstrated that ethanol and ether sustain Taka-amylase activity up to 20% to 25% of the organic solvents, with ether providing twice the stability of ethanol. Molecular dynamics simulations further revealed that Taka-amylase has a more stable structure in ether and ethanol relative to other organic solvents. In addition, the analysis showed that the loop located near the active site in the AB-domain is a vulnerable site for enzyme destabilization when exposed to organic solvents. The ability of Taka-amylase to preserve the secondary loop structure in ether and ethanol contributed to the enzyme's activity. In addition, the solvent accessibility surface area of Taka-amylase is distributed throughout all enzyme structures, thereby contributing to the instability of Taka-amylase in the presence of most organic solvents.
期刊介绍:
Bioinformatics and Biology Insights is an open access, peer-reviewed journal that considers articles on bioinformatics methods and their applications which must pertain to biological insights. All papers should be easily amenable to biologists and as such help bridge the gap between theories and applications.