推进精准医学:放射学和计算病理学中的代数拓扑学和微分几何。

IF 5.1 2区 医学 Q1 MEDICINE, RESEARCH & EXPERIMENTAL
Richard M. Levenson , Yashbir Singh , Bastian Rieck , Quincy A. Hathaway , Colleen Farrelly , Jennifer Rozenblit , Prateek Prasanna , Bradley Erickson , Ashok Choudhary , Gunnar Carlsson , Deepa Sarkar
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引用次数: 0

摘要

精准医疗旨在根据患者的个体特征提供个性化护理,而不是针对一组疾病或患者人口统计学特征提供指导性疗法。放射学和病理学图像是有关疾病存在、类型和状态的主要信息来源。探索医学成像中像素的数学关系("放射组学")和数字病理切片中细胞尺度结构("病理组学")为提取定性数据以及越来越多的定量数据提供了强大的工具。然而,如果应用微分几何学和代数拓扑学等数学领域的其他方法,这些分析方法可能会得到极大的增强。几何学的优势在于它能够提供精确的局部测量,如曲率,这对于识别多个空间层面的异常情况至关重要。这些测量结果可以增强传统放射组学中提取的定量特征,使诊断更加细致入微。相比之下,拓扑结构是一种稳健的形状描述符,能捕捉到连接成分和孔洞等基本特征。拓扑数据分析领域最初是为了探索数据的形状而建立的,大脑中的功能网络连接就是一个突出的例子。现在,该领域的工具越来越多地被用于探索医学图像和数字化病理切片中物理结构的组织模式。通过利用微分几何学和代数拓扑学的工具,研究人员和临床医生或许能更全面、多层次地了解医学影像,为精准医学的发展做出贡献。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Advancing Precision Medicine: Algebraic Topology and Differential Geometry in Radiology and Computational Pathology

Precision medicine aims to provide personalized care based on individual patient characteristics, rather than guideline-directed therapies for groups of diseases or patient demographics. Images—both radiology- and pathology-derived—are a major source of information on presence, type, and status of disease. Exploring the mathematical relationship of pixels in medical imaging (“radiomics”) and cellular-scale structures in digital pathology slides (“pathomics”) offers powerful tools for extracting both qualitative and, increasingly, quantitative data. These analytical approaches, however, may be significantly enhanced by applying additional methods arising from fields of mathematics such as differential geometry and algebraic topology that remain underexplored in this context. Geometry’s strength lies in its ability to provide precise local measurements, such as curvature, that can be crucial for identifying abnormalities at multiple spatial levels. These measurements can augment the quantitative features extracted in conventional radiomics, leading to more nuanced diagnostics. By contrast, topology serves as a robust shape descriptor, capturing essential features such as connected components and holes. The field of topological data analysis was initially founded to explore the shape of data, with functional network connectivity in the brain being a prominent example. Increasingly, its tools are now being used to explore organizational patterns of physical structures in medical images and digitized pathology slides. By leveraging tools from both differential geometry and algebraic topology, researchers and clinicians may be able to obtain a more comprehensive, multi-layered understanding of medical images and contribute to precision medicine’s armamentarium.

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来源期刊
Laboratory Investigation
Laboratory Investigation 医学-病理学
CiteScore
8.30
自引率
0.00%
发文量
125
审稿时长
2 months
期刊介绍: Laboratory Investigation is an international journal owned by the United States and Canadian Academy of Pathology. Laboratory Investigation offers prompt publication of high-quality original research in all biomedical disciplines relating to the understanding of human disease and the application of new methods to the diagnosis of disease. Both human and experimental studies are welcome.
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