转录组分析显示,SMURF2 是口腔癌的预后生物标志物。

IF 2 3区 生物学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY
Journal of Applied Genetics Pub Date : 2025-02-01 Epub Date: 2024-05-03 DOI:10.1007/s13353-024-00869-w
Lu Deng, Zhihong Wu, Chuanxi Sun, Zhe Liu
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引用次数: 0

摘要

背景:TGF-β 通路的激活可促进肿瘤发生。了解口腔癌中的 TGF 相关基因(TRGs)并确定其预后价值至关重要:方法:选择 TRGs 建立基于套索回归的预后模型。根据风险模型将口腔癌患者分为高危和低危两组。随后,采用多变量 COX 回归确定预后标志物。此外,还利用实时定量聚合酶链反应(qRT-PCR)和人类蛋白质图谱(HPA)数据库验证了SMURF2的表达。为了研究SMURF2表达与免疫细胞浸润之间的关系,我们进行了单样本基因组富集分析(ssGSEA):结果:我们发现了 16 个在口腔癌中差异表达的 TRGs,所有这些 TRGs 都出现了上调。结果:我们在口腔癌中发现了16个差异表达的TRGs,所有TRGs都出现了上调,我们从中筛选出8个TRGs作为预后特征。此外,高风险组的免疫细胞浸润水平、免疫评分和肿瘤纯度均较低。有趣的是,我们还发现 SMURF2 是一个独立的预后生物标志物。公共数据库和 qRT-PCR 分析证实,SMURF2 在口腔癌中上调。重要的是,我们的研究结果表明,SMURF2的表达与免疫微环境密切相关:结论:我们构建的 8-TRG 特征预后模型能够预测口腔癌患者的生存率和免疫活性。SMURF2可有效识别口腔癌的预后并评估其免疫效果。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Transcriptome analysis revealed SMURF2 as a prognostic biomarker for oral cancer.

Transcriptome analysis revealed SMURF2 as a prognostic biomarker for oral cancer.

Background: The activation of TGF-β pathway can facilitate tumorigenesis. Understanding the TGF-related genes (TRGs) in oral cancer and determining their prognostic value is of utmost importance.

Methods: The TRGs were selected to develop a prognostic model based on lasso regression. Oral cancer patients were classified into high-risk and low-risk groups based on the risk model. Subsequently, multivariate COX regression was employed to identify the prognostic marker. Additionally, the expression of SMURF2 was validated using quantitative real-time polymerase chain reaction (qRT-PCR) and the Human Protein Atlas (HPA) database. To investigate the relationship between SMURF2 expression and immune cell infiltrations, we conducted single-sample Gene Set Enrichment Analysis (ssGSEA) analyses.

Results: We identified 16 differentially expressed TRGs in oral cancer, all of which showed upregulation. From these, we selected eight TRGs as prognostic signatures. Furthermore, the high-risk group demonstrated lower infiltration levels of immune cells, immune score, and higher tumor purity. Interestingly, we also found that SMURF2 serves as an independent prognostic biomarker. SMURF2 was upregulated in oral cancer, as confirmed by public databases and qRT-PCR analysis. Importantly, our results indicate a close association between SMURF2 expression and the immune microenvironment.

Conclusion: The 8-TRG signature prognosis model that we constructed has the ability to predict the survival rate and immune activity of oral cancer patients. SMURF2 could be effective in recognizing prognosis and evaluating immune efficacy for oral cancer.

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来源期刊
Journal of Applied Genetics
Journal of Applied Genetics 生物-生物工程与应用微生物
CiteScore
4.30
自引率
4.20%
发文量
62
审稿时长
6-12 weeks
期刊介绍: The Journal of Applied Genetics is an international journal on genetics and genomics. It publishes peer-reviewed original papers, short communications (including case reports) and review articles focused on the research of applicative aspects of plant, human, animal and microbial genetics and genomics.
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