模型选择和构象效应对硅学筛选活动描述符的影响:Rh 催化丙烯酸酯氢化的案例研究

IF 3.2 3区 化学 Q2 CHEMISTRY, PHYSICAL
Margareth S. Baidun, Adarsh V. Kalikadien, Laurent Lefort and Evgeny A. Pidko*, 
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引用次数: 0

摘要

数据驱动催化剂设计是一种很有前途的方法,可用于解决合成转化过程中寻找合适催化剂的难题。仅依赖于前催化剂结构的描述符计算模型具有潜在的通用性,但可能会忽略催化剂与底物之间的相互作用。本研究以 Rh 催化的不对称氢化反应为背景,探讨了特定于底物的相互作用,以阐明底物的加入对催化剂结构以及由此得出的描述符的影响。我们将以 2-乙酰氨基丙烯酸甲酯为模型底物的催化剂-底物复合物与涉及占位底物降冰片二烯的通用前催化剂结构进行了比较,共涉及 11 种具有双叉双膦配体的 Rh 催化剂。对于这些体系,全构象集合分析揭示了一个有趣的发现:刚性底物诱导了配体的构象自由度。这种灵活性产生了更多样化的构象景观,显示了催化剂-底物动力学中以前被忽视的一个方面。电子描述符的变化尤其突出了特定基质结构与前催化剂结构之间的差异。这项研究表明,类似前催化剂的通用模型可能缺乏对催化剂构象自由度的重要洞察。我们推测,这种构象自由可能是一种更普遍的现象,会影响基于 TM 催化计算的通用预测模型的开发。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Impact of Model Selection and Conformational Effects on the Descriptors for In Silico Screening Campaigns: A Case Study of Rh-Catalyzed Acrylate Hydrogenation

Impact of Model Selection and Conformational Effects on the Descriptors for In Silico Screening Campaigns: A Case Study of Rh-Catalyzed Acrylate Hydrogenation

Impact of Model Selection and Conformational Effects on the Descriptors for In Silico Screening Campaigns: A Case Study of Rh-Catalyzed Acrylate Hydrogenation

Data-driven catalyst design is a promising approach for addressing the challenges in identifying suitable catalysts for synthetic transformations. Models with descriptor calculations relying solely on the precatalyst structure are potentially generalizable but may overlook catalyst–substrate interactions. This study explores substrate-specific interactions in the context of Rh-catalyzed asymmetric hydrogenation to elucidate the impact of substrate inclusion on the catalyst structure and on the descriptors derived from it. We compare a catalyst–substrate complex with methyl 2-acetamidoacrylate as a model substrate with the generic precatalyst structure involving a placeholder substrate, norbornadiene, across 11 Rh-based catalysts with bidentate bisphosphine ligands. For these systems, a full conformer ensemble analysis reveals an intriguing finding: the rigid substrate induces conformational freedom in the ligand. This flexibility gives rise to a more diverse conformer landscape, showing a previously overlooked aspect of catalyst–substrate dynamics. Electronic descriptor variations particularly highlight differences between substrate-specific and precatalyst structures. This study suggests that generic precatalyst-like models may lack crucial insights into the conformational freedom of the catalyst. We speculate that such conformational freedom may be a more general phenomenon that can influence the development of generalizable predictive models of computational TM-based catalysis.

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来源期刊
The Journal of Physical Chemistry C
The Journal of Physical Chemistry C 化学-材料科学:综合
CiteScore
6.50
自引率
8.10%
发文量
2047
审稿时长
1.8 months
期刊介绍: The Journal of Physical Chemistry A/B/C is devoted to reporting new and original experimental and theoretical basic research of interest to physical chemists, biophysical chemists, and chemical physicists.
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