Margareth S. Baidun, Adarsh V. Kalikadien, Laurent Lefort and Evgeny A. Pidko*,
{"title":"模型选择和构象效应对硅学筛选活动描述符的影响:Rh 催化丙烯酸酯氢化的案例研究","authors":"Margareth S. Baidun, Adarsh V. Kalikadien, Laurent Lefort and Evgeny A. Pidko*, ","doi":"10.1021/acs.jpcc.4c01631","DOIUrl":null,"url":null,"abstract":"<p >Data-driven catalyst design is a promising approach for addressing the challenges in identifying suitable catalysts for synthetic transformations. Models with descriptor calculations relying solely on the precatalyst structure are potentially generalizable but may overlook catalyst–substrate interactions. This study explores substrate-specific interactions in the context of Rh-catalyzed asymmetric hydrogenation to elucidate the impact of substrate inclusion on the catalyst structure and on the descriptors derived from it. We compare a catalyst–substrate complex with methyl 2-acetamidoacrylate as a model substrate with the generic precatalyst structure involving a placeholder substrate, norbornadiene, across 11 Rh-based catalysts with bidentate bisphosphine ligands. For these systems, a full conformer ensemble analysis reveals an intriguing finding: the rigid substrate induces conformational freedom in the ligand. This flexibility gives rise to a more diverse conformer landscape, showing a previously overlooked aspect of catalyst–substrate dynamics. Electronic descriptor variations particularly highlight differences between substrate-specific and precatalyst structures. This study suggests that generic precatalyst-like models may lack crucial insights into the conformational freedom of the catalyst. We speculate that such conformational freedom may be a more general phenomenon that can influence the development of generalizable predictive models of computational TM-based catalysis.</p>","PeriodicalId":61,"journal":{"name":"The Journal of Physical Chemistry C","volume":"128 19","pages":"7987–7998"},"PeriodicalIF":3.2000,"publicationDate":"2024-05-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://pubs.acs.org/doi/epdf/10.1021/acs.jpcc.4c01631","citationCount":"0","resultStr":"{\"title\":\"Impact of Model Selection and Conformational Effects on the Descriptors for In Silico Screening Campaigns: A Case Study of Rh-Catalyzed Acrylate Hydrogenation\",\"authors\":\"Margareth S. Baidun, Adarsh V. Kalikadien, Laurent Lefort and Evgeny A. Pidko*, \",\"doi\":\"10.1021/acs.jpcc.4c01631\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p >Data-driven catalyst design is a promising approach for addressing the challenges in identifying suitable catalysts for synthetic transformations. Models with descriptor calculations relying solely on the precatalyst structure are potentially generalizable but may overlook catalyst–substrate interactions. This study explores substrate-specific interactions in the context of Rh-catalyzed asymmetric hydrogenation to elucidate the impact of substrate inclusion on the catalyst structure and on the descriptors derived from it. We compare a catalyst–substrate complex with methyl 2-acetamidoacrylate as a model substrate with the generic precatalyst structure involving a placeholder substrate, norbornadiene, across 11 Rh-based catalysts with bidentate bisphosphine ligands. For these systems, a full conformer ensemble analysis reveals an intriguing finding: the rigid substrate induces conformational freedom in the ligand. This flexibility gives rise to a more diverse conformer landscape, showing a previously overlooked aspect of catalyst–substrate dynamics. Electronic descriptor variations particularly highlight differences between substrate-specific and precatalyst structures. This study suggests that generic precatalyst-like models may lack crucial insights into the conformational freedom of the catalyst. 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Impact of Model Selection and Conformational Effects on the Descriptors for In Silico Screening Campaigns: A Case Study of Rh-Catalyzed Acrylate Hydrogenation
Data-driven catalyst design is a promising approach for addressing the challenges in identifying suitable catalysts for synthetic transformations. Models with descriptor calculations relying solely on the precatalyst structure are potentially generalizable but may overlook catalyst–substrate interactions. This study explores substrate-specific interactions in the context of Rh-catalyzed asymmetric hydrogenation to elucidate the impact of substrate inclusion on the catalyst structure and on the descriptors derived from it. We compare a catalyst–substrate complex with methyl 2-acetamidoacrylate as a model substrate with the generic precatalyst structure involving a placeholder substrate, norbornadiene, across 11 Rh-based catalysts with bidentate bisphosphine ligands. For these systems, a full conformer ensemble analysis reveals an intriguing finding: the rigid substrate induces conformational freedom in the ligand. This flexibility gives rise to a more diverse conformer landscape, showing a previously overlooked aspect of catalyst–substrate dynamics. Electronic descriptor variations particularly highlight differences between substrate-specific and precatalyst structures. This study suggests that generic precatalyst-like models may lack crucial insights into the conformational freedom of the catalyst. We speculate that such conformational freedom may be a more general phenomenon that can influence the development of generalizable predictive models of computational TM-based catalysis.
期刊介绍:
The Journal of Physical Chemistry A/B/C is devoted to reporting new and original experimental and theoretical basic research of interest to physical chemists, biophysical chemists, and chemical physicists.