Ankita Jalan, Satyam Sangeet, Amit Kumar Pradhan, N. Shaemningwar Moyon
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The BSA fluorescence intensity was quenched with increasing concentration of SEL which indicates interactions of SEL with BSA. Stern–Volmer quenching analysis and lifetime studies indicate the involvement of dynamic quenching. However, some contributions from the static quenching mechanism could not be ruled out unambiguously. The association constant was found to be 5.34 × 10<sup>5</sup> M<sup>−1</sup> and it has a single binding site. The Förster distance (r) indicated probable energy transmission between the BSA and SEL. The positive entropy changes and enthalpy change indicate that the main interacting forces are hydrophobic forces, also evidenced by the results of molecular modeling studies. Conformation change in protein framework was revealed from FTIR, synchronous and 3D fluorescence and CD studies. Competitive binding experiments as well as docking studies suggest that SEL attaches itself to site I (subdomain IIA) of BSA where warfarin binds. 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引用次数: 0
摘要
药物与血浆蛋白的结合决定了药物在生理系统中的命运,因此,深入了解药物在血液中的相互作用对于了解药物的药效学和药代动力学,进而了解其治疗潜力非常重要。在这方面,我们的研究采用吸收、稳态荧光、时间分辨、荧光共振能量转移、傅立叶变换红外光谱(FTIR)、圆二色光谱(CD)、同步和三维荧光、盐荧光、分子对接和分子动力学模拟等方法,描述了对多种实体瘤有卓越疗效的强效抗癌药物赛卢米替尼(SEL)与血浆蛋白牛血清白蛋白(BSA)的相互作用机制。随着 SEL 浓度的增加,BSA 的荧光强度被淬灭,这表明 SEL 与 BSA 发生了相互作用。斯特恩-沃尔默淬灭分析和寿命研究表明了动态淬灭的参与。不过,静态淬灭机制的一些贡献也不能明确排除。研究发现,其结合常数为 5.34 × 105 M-1,并且只有一个结合位点。福斯特距离(r)表明 BSA 和 SEL 之间可能存在能量传递。正熵变和焓变表明主要的相互作用力是疏水力,分子模型研究的结果也证明了这一点。傅立叶变换红外光谱、同步和三维荧光以及光盘研究揭示了蛋白质框架的构象变化。竞争性结合实验和对接研究表明,SEL 与华法林结合的 BSA 位点 I(子域 IIA)结合。分子动力学模拟表明 SEL-BSA 复合物非常稳定。在不同金属存在的情况下,BSA 和 SEL 之间的结合能受到不同的影响。
Exploring the interaction of a potent anti-cancer drug Selumetinib with bovine serum albumin: Spectral and computational attributes
The binding of drugs to plasma proteins determines its fate within the physiological system, hence profound understanding of its interaction within the bloodstream is important to understand its pharmacodynamics and pharmacokinetics and thereby its therapeutic potential. In this regard, our work delineates the mechanism of interaction of Selumetinib (SEL), a potent anti-cancer drug showing excellent effect against multiple solid tumors, with plasma protein bovine serum albumin (BSA), using methods such as absorption, steady-state fluorescence, time-resolved, fluorescence resonance energy transfer, Fourier transform infrared spectra (FTIR), circular dichroism (CD), synchronous and 3D-fluorescence, salt fluorescence, molecular docking and molecular dynamic simulations. The BSA fluorescence intensity was quenched with increasing concentration of SEL which indicates interactions of SEL with BSA. Stern–Volmer quenching analysis and lifetime studies indicate the involvement of dynamic quenching. However, some contributions from the static quenching mechanism could not be ruled out unambiguously. The association constant was found to be 5.34 × 105 M−1 and it has a single binding site. The Förster distance (r) indicated probable energy transmission between the BSA and SEL. The positive entropy changes and enthalpy change indicate that the main interacting forces are hydrophobic forces, also evidenced by the results of molecular modeling studies. Conformation change in protein framework was revealed from FTIR, synchronous and 3D fluorescence and CD studies. Competitive binding experiments as well as docking studies suggest that SEL attaches itself to site I (subdomain IIA) of BSA where warfarin binds. Molecular dynamic simulations indicate the stability of the SEL–BSA complex. The association energy between BSA and SEL is affected in the presence of different metals differently.
期刊介绍:
Journal of Molecular Recognition (JMR) publishes original research papers and reviews describing substantial advances in our understanding of molecular recognition phenomena in life sciences, covering all aspects from biochemistry, molecular biology, medicine, and biophysics. The research may employ experimental, theoretical and/or computational approaches.
The focus of the journal is on recognition phenomena involving biomolecules and their biological / biochemical partners rather than on the recognition of metal ions or inorganic compounds. Molecular recognition involves non-covalent specific interactions between two or more biological molecules, molecular aggregates, cellular modules or organelles, as exemplified by receptor-ligand, antigen-antibody, nucleic acid-protein, sugar-lectin, to mention just a few of the possible interactions. The journal invites manuscripts that aim to achieve a complete description of molecular recognition mechanisms between well-characterized biomolecules in terms of structure, dynamics and biological activity. Such studies may help the future development of new drugs and vaccines, although the experimental testing of new drugs and vaccines falls outside the scope of the journal. Manuscripts that describe the application of standard approaches and techniques to design or model new molecular entities or to describe interactions between biomolecules, but do not provide new insights into molecular recognition processes will not be considered. Similarly, manuscripts involving biomolecules uncharacterized at the sequence level (e.g. calf thymus DNA) will not be considered.