基于 Alphafold 反向对接策略,对作为 RORα 激动剂和 RORγ 抑制剂的 celastrol 及其衍生物进行抗肿瘤研究

IF 2.6 4区 医学 Q3 CHEMISTRY, MEDICINAL
Bangwen Yue, Xiuli Wu
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引用次数: 0

摘要

Celastrol (CSL) 是一种从威灵仙(Tripterygium wilfordii)根皮中提取的活性化合物,因其在抗癌和脑神经方面的卓越功效而备受研究。我们通过生物转化获得了一系列毒性降低的衍生物。在此,我们利用 AlphaFold DB 和 Schrödinger's Glide 中的 23391 个同种人蛋白质与 CSL 的基本支架进行反向对接,以发现其衍生物的药理活性。根据药物靶标数据库,研究选择的靶标是维甲酸相关孤儿受体家族(RORs)中的RORα和RORγ。我们通过 QikProp 对这一系列化合物进行了筛选、对接动力学刺激和分子力学-广义天生表面积(MMGBSA)结合能计算。我们还进行了荧光偏振试验(FP 试验)、荧光素酶报告基因试验和 CCK8 试验。总之,我们对 CSLs 进行了反向对接,找到了其关键靶点 RORα 和 RORγ,从而解释了其抗炎和抗肿瘤作用。荧光素酶报告基因实验表明,2 μM 18-OH-CSL 和 28-OH-CSL 对 RORα-LBD 的激动作用最强,而 CSL 对 RORγ-LBD 的抑制作用较弱,这些化合物对 KG-1a 肿瘤细胞也有良好的凋亡作用。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Antitumor studies on celastrol and its derivatives as RORα agonists and RORγ inhibitors based on Alphafold reverse docking strategy

Antitumor studies on celastrol and its derivatives as RORα agonists and RORγ inhibitors based on Alphafold reverse docking strategy

Antitumor studies on celastrol and its derivatives as RORα agonists and RORγ inhibitors based on Alphafold reverse docking strategy

Celastrol (CSL), an active compound extracted from the root bark of Tripterygium wilfordii, has been studied for its outstanding efficacy in anti-cancer and cerebral neurology. We have obtained a series of derivatives with reduced toxicity through biotransformation. Here, 23391 proteins of homo sapiens from AlphaFold DB and Schrödinger’s Glide were used for reverse docking with the basic scaffold of CSL to discover the pharmacological activity of its derivatives. Based on the drug target database, the targets selected for the study were the RORα and RORγ of the Retinoic Acid Related-Orphan Receptors family (RORs). The series of compounds were filtered through QikProp, docked for dynamics stimulation and molecular mechanics-generalized born surface area (MMGBSA) binding energy calculations. We also performed fluorescence polarization assay (FP assay), luciferase reporter gene assay, and the CCK8 assay. In summary, we performed reverse docking of CSLs to find its key targets RORα and RORγ to explain its anti-inflammatory and anti-tumor effects, found binding sites Gln19, Arg97, Arg100 for RORα-Ligand binding domain (LBD) and Gln25, Leu26, Arg103, Arg106 for RORγ-LBD, screened for the highest affinity derivatives. The luciferase reporter gene assay showed that 2 μM 18-OH-CSL and 28-OH-CSL had the strongest agonistic effect on RORα-LBD, while CSLs had the weak inhibitory effect on RORγ-LBD, and these compounds also demonstrated a good apoptotic effect on the KG-1a tumor cell.

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来源期刊
Medicinal Chemistry Research
Medicinal Chemistry Research 医学-医药化学
CiteScore
4.70
自引率
3.80%
发文量
162
审稿时长
5.0 months
期刊介绍: Medicinal Chemistry Research (MCRE) publishes papers on a wide range of topics, favoring research with significant, new, and up-to-date information. Although the journal has a demanding peer review process, MCRE still boasts rapid publication, due in part, to the length of the submissions. The journal publishes significant research on various topics, many of which emphasize the structure-activity relationships of molecular biology.
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