A.N. Kristanti, N. Aminah, T.C. Bramayudha, K.W. Mukharomah, A.P. Wardana, B. Ilham, Y. Takaya
{"title":"从Illicium verum Hook.f.果实中分离出马来酚G并将其作为抗疟药物进行计算预测","authors":"A.N. Kristanti, N. Aminah, T.C. Bramayudha, K.W. Mukharomah, A.P. Wardana, B. Ilham, Y. Takaya","doi":"10.14233/ajchem.2024.31287","DOIUrl":null,"url":null,"abstract":"The present research focused on the isolation of the major compound in Illicium verum Hook.f. fruit and exploring its potential as an inhibitor of Plasmodium falciparum through computational approach, molecular docking and dynamic simulation. Verimol G was successfully extracted from the ethyl acetate extract for the first time from fruit. A successful prediction of the preferred orientation of the ligand to the receptor has been determined by the docking molecular approach. A molecular dynamics simulation was also conducted to study the dynamic behaviour of verimol G in relation to wild-type P. falciparum dihydrofolate reductase (PfDHFR). The free binding energy analyses (ΔGbind) of verimol G-PfDHRF was found to be -8.07 kcal mol-1. The decomposition energy results (ΔGbindresidue) showed that there were seven key binding residues which stabilized the binding of verimol G. The anticipated data could potentially serve as valuable insights for the advancement and formulation of an antiplasmodial medicine.","PeriodicalId":8494,"journal":{"name":"Asian Journal of Chemistry","volume":"45 13","pages":""},"PeriodicalIF":0.0000,"publicationDate":"2024-03-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Isolation of Verimol G from Illicium verum Hook.f. Fruit and its Computational Prediction as Antimalarial Agent\",\"authors\":\"A.N. Kristanti, N. Aminah, T.C. Bramayudha, K.W. Mukharomah, A.P. Wardana, B. Ilham, Y. Takaya\",\"doi\":\"10.14233/ajchem.2024.31287\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"The present research focused on the isolation of the major compound in Illicium verum Hook.f. fruit and exploring its potential as an inhibitor of Plasmodium falciparum through computational approach, molecular docking and dynamic simulation. Verimol G was successfully extracted from the ethyl acetate extract for the first time from fruit. A successful prediction of the preferred orientation of the ligand to the receptor has been determined by the docking molecular approach. A molecular dynamics simulation was also conducted to study the dynamic behaviour of verimol G in relation to wild-type P. falciparum dihydrofolate reductase (PfDHFR). The free binding energy analyses (ΔGbind) of verimol G-PfDHRF was found to be -8.07 kcal mol-1. The decomposition energy results (ΔGbindresidue) showed that there were seven key binding residues which stabilized the binding of verimol G. The anticipated data could potentially serve as valuable insights for the advancement and formulation of an antiplasmodial medicine.\",\"PeriodicalId\":8494,\"journal\":{\"name\":\"Asian Journal of Chemistry\",\"volume\":\"45 13\",\"pages\":\"\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2024-03-30\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Asian Journal of Chemistry\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.14233/ajchem.2024.31287\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q4\",\"JCRName\":\"Chemistry\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Asian Journal of Chemistry","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.14233/ajchem.2024.31287","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"Chemistry","Score":null,"Total":0}
引用次数: 0
摘要
本研究的重点是分离 Illicium verum Hook.f. 果实中的主要化合物,并通过计算方法、分子对接和动态模拟探索其作为恶性疟原虫抑制剂的潜力。首次成功地从果实的乙酸乙酯提取物中提取出了 Verimol G。通过对接分子方法,成功预测了配体与受体的优先取向。此外,还进行了分子动力学模拟,以研究藜芦醇 G 与野生型恶性疟原虫二氢叶酸还原酶(PfDHFR)的动态行为。分析发现,维罗莫 G-PfDHRF 的自由结合能(ΔGbind)为 -8.07 kcal mol-1。分解能(ΔGbindresidue)结果表明,有七个关键的结合残基稳定了威利莫 G 的结合。
Isolation of Verimol G from Illicium verum Hook.f. Fruit and its Computational Prediction as Antimalarial Agent
The present research focused on the isolation of the major compound in Illicium verum Hook.f. fruit and exploring its potential as an inhibitor of Plasmodium falciparum through computational approach, molecular docking and dynamic simulation. Verimol G was successfully extracted from the ethyl acetate extract for the first time from fruit. A successful prediction of the preferred orientation of the ligand to the receptor has been determined by the docking molecular approach. A molecular dynamics simulation was also conducted to study the dynamic behaviour of verimol G in relation to wild-type P. falciparum dihydrofolate reductase (PfDHFR). The free binding energy analyses (ΔGbind) of verimol G-PfDHRF was found to be -8.07 kcal mol-1. The decomposition energy results (ΔGbindresidue) showed that there were seven key binding residues which stabilized the binding of verimol G. The anticipated data could potentially serve as valuable insights for the advancement and formulation of an antiplasmodial medicine.