(Z)-2,6-双(4-溴苯基)-3,3-二甲基-4-(2-(2,4,6-三氯苯基)肼)哌啶衍生物针对 SARS-CoV-2 主蛋白酶的合成、DFT、室内分子对接、分子动力学模拟和 ADMET 研究

Solo Lorin, Rajaraman Dhanakotti, Sonadevi Selvam, R. Jaganathan, P. Kumaradhas, Karuppiah Nagaraj, Raja Kaliyaperumal
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摘要

目前,由于 SARS-CoV-2 病毒引起的 COVID-19 流行病,200 多个国家面临着福利紧急状 况。它将对世界经济和全球卫生部门造成极大的影响。本研究利用计算方法对新合成的(Z)-2,6-双(4-溴苯基)-3,3-二甲基-4-(2-(2,4,6-三氯苯基)肼)哌啶(BBDTHP)分子对 SARS-CoV-2 重要蛋白靶点的抑制潜力进行了研究。对标题化合物 BBDTHP 进行了光谱表征,如傅立叶变换红外光谱、1H-NMR、13C-NMR、1H-1H COSY 和 1H-13C COSY 光谱。通过 DFT 方法对化合物的几何形状进行了优化,并将其结果与 X 射线衍射数据进行了比较。计算得出的最高占位分子轨道(HOMO)和最低未占位分子轨道(LUMO)的能量表明了该化合物的稳定性和反应活性。使用相同的理论水平绘制了分子静电位(MEP)图,以显示分子的化学反应性和电荷分布。对合成的化合物进行的分子对接研究显示,该化合物与 COVID-19 蛋白酶之间存在有效的相互作用,并产生了良好的活性。我们希望本研究能帮助该领域的工作人员开发出针对新型冠状病毒的潜在疫苗和疗法。我们还进行了虚拟 ADME 研究,确定了目标化合物的生物、电子和理化性质之间的关系。此外,还通过计算技术对标题化合物进行了毒性预测。通过分子动力学模拟研究,我们确认了氢键相互作用和分子的稳定性。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Synthesis, DFT, in-silico molecular docking, molecular dynamic simulation and ADMET studies of (Z)-2,6-bis(4-bromophenyl)-3,3-dimethyl-4-(2-(2,4,6-trichlorophenyl) hydrazono) piperidine derivatives against the SARS-CoV-2 main-protease
Nowadays, over 200 countries face a wellbeing emergency because of epidemiological disease COVID-19 caused by the SARS-CoV-2 virus. It will cause a very high effect on the world economy and the worldwide health sector. The present work is an investigation of the newly synthesized (Z)-2,6-bis(4-bromophenyl)-3,3-dimethyl-4-(2-(2,4,6-trichlorophenyl) hydrazono) piperidine (BBDTHP) molecule inhibitory potential against important protein targets of SARS-CoV-2 using computational approaches. For the title compound BBDTHP, spectroscopic characterization like FT-IR, 1H-NMR, 13C-NMR, 1H–1H COSY and 1H–13C COSY spectrum were carried out. The geometry of the compound had been optimized by the DFT method and its results were compared with the X-ray diffraction data. The calculated energies for the Highest occupied molecular orbital (HOMO) and the Lowest unoccupied molecular orbital (LUMO) showed the stability and reactivity of the title compound. The molecular electrostatic potential (MEP) picture was drawn using the same level of theory to visualize the chemical reactivity and charge distribution on the molecule. Molecular docking study performed for the synthesized compound revealed an efficient interaction with the COVID-19 protease and resulted in good activities. We hope the present study would help workers in the field to develop potential vaccines and therapeutics against the novel coronavirus. Virtual ADME studies were carried out as well and a relationship between biological, electronic and physicochemical qualifications of the target compound was determined. Toxicity prediction by computational technique for the title compound was also carried out. From the molecular dynamic simulations study, we confirmed hydrogen bonding interactions and stability of the molecule.
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